diff --git a/poetry.lock b/poetry.lock index 90ce646..c5a8b50 100644 --- a/poetry.lock +++ b/poetry.lock @@ -15,10 +15,10 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] +tests_no_zope = ["cloudpickle", "pytest-mypy-plugins", "mypy", "six", "pytest (>=4.3.0)", "pympler", "hypothesis", "coverage[toml] (>=5.0.2)"] +tests = ["cloudpickle", "zope.interface", "pytest-mypy-plugins", "mypy", "six", "pytest (>=4.3.0)", "pympler", "hypothesis", "coverage[toml] (>=5.0.2)"] +docs = ["sphinx-notfound-page", "zope.interface", "sphinx", "furo"] +dev = ["cloudpickle", "pre-commit", "sphinx-notfound-page", "sphinx", "furo", "zope.interface", "pytest-mypy-plugins", "mypy", "six", "pytest (>=4.3.0)", "pympler", "hypothesis", "coverage[toml] (>=5.0.2)"] [[package]] name = "black" @@ -37,10 +37,10 @@ tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} [package.extras] -colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.7.4)"] -jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] uvloop = ["uvloop (>=0.15.2)"] +jupyter = ["tokenize-rt (>=3.2.0)", "ipython (>=7.8.0)"] +d = ["aiohttp (>=3.7.4)"] +colorama = ["colorama (>=0.4.3)"] [[package]] name = "bleach" @@ -55,8 +55,8 @@ six = ">=1.9.0" webencodings = "*" [package.extras] +dev = ["mypy (==0.942)", "black (==22.3.0)", "hashin (==0.17.0)", "wheel (==0.37.1)", "twine (==4.0.0)", "sphinx (==4.3.2)", "tox (==3.24.5)", "flake8 (==4.0.1)", "pytest (==7.1.1)", "pip-tools (==6.5.1)"] css = ["tinycss2 (>=1.1.0)"] -dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"] [[package]] name = "certifi" @@ -120,7 +120,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "6.4.2" +version = "6.4.3" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -225,9 +225,9 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] +testing = ["importlib-resources (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-black (>=0.3.7)", "pytest-perf (>=0.9.2)", "flufl.flake8", "pyfakefs", "packaging", "pytest-enabler (>=1.0.1)", "pytest-cov", "pytest-flake8", "pytest-checkdocs (>=2.4)", "pytest (>=6)"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +docs = ["rst.linker (>=1.9)", "jaraco.packaging (>=9)", "sphinx"] [[package]] name = "iniconfig" @@ -254,8 +254,8 @@ optional = false python-versions = ">=3.7" [package.extras] -test = ["pytest", "pytest-trio", "pytest-asyncio (>=0.17)", "testpath", "trio", "async-timeout"] -trio = ["trio", "async-generator"] +trio = ["async-generator", "trio"] +test = ["async-timeout", "trio", "testpath", "pytest-asyncio (>=0.17)", "pytest-trio", "pytest"] [[package]] name = "keyring" @@ -272,8 +272,8 @@ pywin32-ctypes = {version = "<0.1.0 || >0.1.0,<0.1.1 || >0.1.1", markers = "sys_ SecretStorage = {version = ">=3.2", markers = "sys_platform == \"linux\""} [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +testing = ["pytest-mypy (>=0.9.1)", "pytest-black (>=0.3.7)", "pytest-enabler (>=1.0.1)", "pytest-cov", "pytest-flake8", "pytest-checkdocs (>=2.4)", "pytest (>=6)"] +docs = ["jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "jaraco.packaging (>=9)", "sphinx"] [[package]] name = "mccabe" @@ -297,9 +297,9 @@ tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} typing-extensions = ">=3.10" [package.extras] -dmypy = ["psutil (>=4.0)"] -python2 = ["typed-ast (>=1.4.0,<2)"] reports = ["lxml"] +python2 = ["typed-ast (>=1.4.0,<2)"] +dmypy = ["psutil (>=4.0)"] [[package]] name = "mypy-extensions" @@ -311,7 +311,7 @@ python-versions = "*" [[package]] name = "numpy" -version = "1.22.3" +version = "1.23.2" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -357,7 +357,7 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" [package.extras] -testing = ["nose", "coverage"] +testing = ["coverage", "nose"] [[package]] name = "platformdirs" @@ -368,8 +368,8 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] -test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] +test = ["pytest (>=6)", "pytest-mock (>=3.6)", "pytest-cov (>=2.7)", "appdirs (==1.4.4)"] +docs = ["sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)", "proselint (>=0.10.2)", "furo (>=2021.7.5b38)"] [[package]] name = "pluggy" @@ -380,8 +380,8 @@ optional = false python-versions = ">=3.6" [package.extras] -dev = ["pre-commit", "tox"] -testing = ["pytest", "pytest-benchmark"] +testing = ["pytest-benchmark", "pytest"] +dev = ["tox", "pre-commit"] [[package]] name = "py" @@ -432,7 +432,7 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["railroad-diagrams", "jinja2"] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pytest" @@ -453,7 +453,7 @@ py = ">=1.8.2" tomli = ">=1.0.0" [package.extras] -testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] +testing = ["xmlschema", "requests", "pygments (>=2.7.2)", "nose", "mock", "hypothesis (>=3.56)", "argcomplete"] [[package]] name = "pytest-cov" @@ -468,7 +468,7 @@ coverage = {version = ">=5.2.1", extras = ["toml"]} pytest = ">=4.6" [package.extras] -testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] +testing = ["virtualenv", "pytest-xdist", "six", "process-tests", "hunter", "fields"] [[package]] name = "python-gitlab" @@ -483,8 +483,8 @@ requests = ">=2.25.0" requests-toolbelt = ">=0.9.1" [package.extras] -autocompletion = ["argcomplete (>=1.10.0,<3)"] yaml = ["PyYaml (>=5.2)"] +autocompletion = ["argcomplete (>=1.10.0,<3)"] [[package]] name = "python-semantic-release" @@ -507,10 +507,10 @@ tomlkit = ">=0.10.0,<0.11.0" twine = ">=3,<4" [package.extras] -dev = ["tox", "isort", "black"] -docs = ["Sphinx (==1.3.6)", "Jinja2 (==3.0.3)"] -mypy = ["mypy", "types-requests"] -test = ["coverage (>=5,<6)", "pytest (>=5,<6)", "pytest-xdist (>=1,<2)", "pytest-mock (>=2,<3)", "responses (==0.13.3)", "mock (==1.3.0)"] +test = ["mock (==1.3.0)", "responses (==0.13.3)", "pytest-mock (>=2,<3)", "pytest-xdist (>=1,<2)", "pytest (>=5,<6)", "coverage (>=5,<6)"] +mypy = ["types-requests", "mypy"] +docs = ["Jinja2 (==3.0.3)", "Sphinx (==1.3.6)"] +dev = ["black", "isort", "tox"] [[package]] name = "pywin32-ctypes" @@ -551,8 +551,8 @@ idna = ">=2.5,<4" urllib3 = ">=1.21.1,<1.27" [package.extras] -socks = ["PySocks (>=1.5.6,!=1.5.7)"] use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] +socks = ["PySocks (>=1.5.6,!=1.5.7)"] [[package]] name = "requests-toolbelt" @@ -620,8 +620,8 @@ packaging = ">=20.0" tomli = ">=1.0.0" [package.extras] -test = ["pytest (>=6.2)", "virtualenv (>20)"] toml = ["setuptools (>=42)"] +test = ["virtualenv (>20)", "pytest (>=6.2)"] [[package]] name = "six" @@ -667,10 +667,10 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" colorama = {version = "*", markers = "platform_system == \"Windows\""} [package.extras] -dev = ["py-make (>=0.1.0)", "twine", "wheel"] -notebook = ["ipywidgets (>=6)"] -slack = ["slack-sdk"] telegram = ["requests"] +slack = ["slack-sdk"] +notebook = ["ipywidgets (>=6)"] +dev = ["wheel", "twine", "py-make (>=0.1.0)"] [[package]] name = "twine" @@ -709,9 +709,9 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] -brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] -secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] +secure = ["ipaddress", "certifi", "idna (>=2.0.0)", "cryptography (>=1.3.4)", "pyOpenSSL (>=0.14)"] +brotli = ["brotlipy (>=0.6.0)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] [[package]] name = "webencodings" @@ -730,13 +730,13 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +testing = ["pytest-mypy (>=0.9.1)", "pytest-black (>=0.3.7)", "func-timeout", "jaraco.itertools", "pytest-enabler (>=1.0.1)", "pytest-cov", "pytest-flake8", "pytest-checkdocs (>=2.4)", "pytest (>=6)"] +docs = ["rst.linker (>=1.9)", "jaraco.packaging (>=9)", "sphinx"] [metadata] lock-version = "1.1" python-versions = "^3.8,<3.10" -content-hash = "1e52cabf54af905e05d979683b28779e59690cf38ad4f805dbbf455b19d0a337" +content-hash = "ac237e716bae1e33c09d7774b91b23ca4c3ed0ee57ea843b2ddb46f4edc350bf" [metadata.files] atomicwrites = [] diff --git a/pyproject.toml b/pyproject.toml index 1c5e8c3..062d12b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ authors = ["Deepak Mallubhotla "] [tool.poetry.dependencies] python = "^3.8,<3.10" pdme = "^0.8.6" -numpy = "1.22.3" +numpy = "1.23.2" scipy = "1.8.0" [tool.poetry.dev-dependencies]