fmt: formatting changes

deepdog/cli/subset_sim_probs/args.py

@@ -42,11 +42,11 @@ def parse_args() -> argparse.Namespace:
 	confirm_outfile_overwrite_group.add_argument(
 		"--never-overwrite-outfile",
 		action="store_true",
-		help="If a duplicate outfile is detected, skip confirmation and automatically exit early"
+		help="If a duplicate outfile is detected, skip confirmation and automatically exit early",
 	)
 	confirm_outfile_overwrite_group.add_argument(
 		"--force-overwrite-outfile",
 		action="store_true",
-		help="Skips checking for duplicate outfiles and overwrites"
+		help="Skips checking for duplicate outfiles and overwrites",
 	)
 	return parser.parse_args()

deepdog/cli/subset_sim_probs/dicts.py

@@ -34,9 +34,13 @@ def build_model_dict(
 				calculation_dict[calculation_key] = {
 					"_model_key_dict": model_result.parsed_model_keys,
 					"_calculation_key_dict": out.data,
-					"num_finished_runs": int(model_result.result_dict["num_finished_runs"]),
+					"num_finished_runs": int(
+						model_result.result_dict["num_finished_runs"]
+					),
 					"num_runs": int(model_result.result_dict["num_runs"]),
-					"estimated_likelihood": float(model_result.result_dict["estimated_likelihood"]),
+					"estimated_likelihood": float(
+						model_result.result_dict["estimated_likelihood"]
+					),
 				}
 			else:
 				raise ValueError(
@@ -46,7 +50,6 @@ def build_model_dict(
 	return model_dict
 
 
-
 def coalesced_dict(
 	uncoalesced_model_dict: typing.Dict[
 		typing.Tuple, typing.Dict[typing.Tuple, typing.Dict["str", typing.Any]]
@@ -77,7 +80,6 @@ def coalesced_dict(
 				_logger.error(f"We shouldn't be here! Double key for {model_key=}")
 				raise ValueError()
 
-
 	# second pass do probability calculation
 
 	prior = 1 / num_keys
@@ -114,7 +116,9 @@ def write_coalesced_dict(
 	_logger.info(f"Detected model field names {model_field_names}")
 
 	collected_fieldnames = list(model_field_names)
-	collected_fieldnames.extend(["calculations_coalesced", "num_finished_runs", "num_runs", "prob"])
+	collected_fieldnames.extend(
+		["calculations_coalesced", "num_finished_runs", "num_runs", "prob"]
+	)
 	with open(coalesced_output_filename, "w", newline="") as coalesced_output_file:
 		writer = csv.DictWriter(coalesced_output_file, fieldnames=collected_fieldnames)
 		writer.writeheader()

deepdog/cli/subset_sim_probs/main.py

@@ -45,20 +45,25 @@ def main(args: argparse.Namespace):
 		if "outfile" in args and args.outfile:
 			if os.path.exists(args.outfile):
 				if args.never_overwrite_outfile:
-					_logger.warning(f"Filename {args.outfile} already exists, and never want overwrite, so aborting.")
+					_logger.warning(
+						f"Filename {args.outfile} already exists, and never want overwrite, so aborting."
+					)
 					return
 				elif args.force_overwrite_outfile:
 					_logger.warning(f"Forcing overwrite of {args.outfile}")
 				else:
 					# need to confirm
-					confirm_overwrite = deepdog.cli.util.confirm_prompt(f"Filename {args.outfile} exists, overwrite?")
+					confirm_overwrite = deepdog.cli.util.confirm_prompt(
+						f"Filename {args.outfile} exists, overwrite?"
+					)
 					if not confirm_overwrite:
-						_logger.warning(f"Filename {args.outfile} already exists and do not want overwrite, aborting.")
+						_logger.warning(
+							f"Filename {args.outfile} already exists and do not want overwrite, aborting."
+						)
 						return
 					else:
 						_logger.warning(f"Overwriting file {args.outfile}")
 
-
 		indexifier = None
 		if args.indexify_json:
 			with open(args.indexify_json, "r") as indexify_json_file:
@@ -73,7 +78,9 @@ def main(args: argparse.Namespace):
 				indexifier = deepdog.indexify.Indexifier(indexify_data)
 
 		results_dir = pathlib.Path(args.results_directory)
-		out_files = [f for f in results_dir.iterdir() if f.name.endswith("subsetsim.csv")]
+		out_files = [
+			f for f in results_dir.iterdir() if f.name.endswith("subsetsim.csv")
+		]
 		_logger.info(
 			f"Reading {len(out_files)} subsetsim.csv files in directory {args.results_directory}"
 		)

deepdog/cli/util/__init__.py

@@ -1,3 +1,3 @@
 from deepdog.cli.util.confirm import confirm_prompt
 
-__all__ = ["confirm_prompt"]
+__all__ = ["confirm_prompt"]

deepdog/cli/util/confirm.py

@@ -8,12 +8,12 @@ _RESPONSE_MAP = {
 	"n": False,
 	"nope": False,
 	"true": True,
-	"false": False
+	"false": False,
 }
 
+
 def confirm_prompt(question: str) -> bool:
-	""" Prompt with the question and returns yes or no based on response.
+	"""Prompt with the question and returns yes or no based on response."""
-	"""
 	prompt = question + " [y/n]: "
 
 	while True:
@@ -22,4 +22,4 @@ def confirm_prompt(question: str) -> bool:
 		if choice in _RESPONSE_MAP:
 			return _RESPONSE_MAP[choice]
 		else:
-			print(f"Respond with \"yes\" or \"no\"")
+			print(f'Respond with "yes" or "no"')