chore(release): 0.6.3

Merge pull request 'fastfilter' (#14 ) from fastfilter into master
Reviewed-on: #14
2022-06-12 17:35:08 -05:00 · 2022-06-12 13:51:47 +00:00 · 2022-06-11 21:06:27 -05:00 · 2022-06-11 12:40:32 -05:00 · 2022-06-07 22:03:11 +00:00 · 2022-06-07 01:31:28 +00:00
5 changed files with 124 additions and 76 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,21 @@

 All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.

+### [0.6.3](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.2...0.6.3) (2022-06-12)
+
+
+### Features
+
+* adds fast filter variant ([2c5c122](https://gitea.deepak.science:2222/physics/deepdog/commit/2c5c1228209e51d17253f07470e2f1e6dc6872d7))
+* adds tester for fast filter real spectrum ([0a1a277](https://gitea.deepak.science:2222/physics/deepdog/commit/0a1a27759b0d4ab01da214b76ab14bf2b1fe00e3))
+
+### [0.6.2](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.1...0.6.2) (2022-05-26)
+
+
+### Features
+
+* adds better import api for real data run ([d7e0f13](https://gitea.deepak.science:2222/physics/deepdog/commit/d7e0f13ca55197b24cb534c80f321ee76b9c4a40))
+
 ### [0.6.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.0...0.6.1) (2022-05-22)


--- a/deepdog/init.py
+++ b/deepdog/init.py
@@ -2,6 +2,7 @@ import logging
 from deepdog.meta import __version__
 from deepdog.bayes_run import BayesRun
 from deepdog.bayes_run_simulpairs import BayesRunSimulPairs
+from deepdog.real_spectrum_run import RealSpectrumRun


 def get_version():
@@ -12,6 +13,7 @@ __all__ = [
 	"get_version",
 	"BayesRun",
 	"BayesRunSimulPairs",
+	"RealSpectrumRun",
 ]


--- a/deepdog/real_spectrum_run.py
+++ b/deepdog/real_spectrum_run.py
@@ -32,6 +32,28 @@ def get_a_result(input) -> int:
 	return numpy.count_nonzero(pdme.util.fast_v_calc.between(vals, lows, highs))


+def get_a_result_fast_filter(input) -> int:
+	model, dot_inputs, lows, highs, monte_carlo_count, seed = input
+
+	rng = numpy.random.default_rng(seed)
+	# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
+	sample_dipoles = model.get_monte_carlo_dipole_inputs(
+		monte_carlo_count, None, rng_to_use=rng
+	)
+
+	current_sample = sample_dipoles
+	for di, low, high in zip(dot_inputs, lows, highs):
+
+		if len(current_sample) < 1:
+			break
+		vals = pdme.util.fast_v_calc.fast_vs_for_dipoleses(
+			numpy.array([di]), current_sample
+		)
+
+		current_sample = current_sample[numpy.all((vals > low) & (vals < high), axis=1)]
+	return len(current_sample)
+
+
 class RealSpectrumRun:
 	"""
 	A bayes run given some real data.
@@ -65,6 +87,7 @@ class RealSpectrumRun:
 		max_monte_carlo_cycles_steps: int = 10,
 		chunksize: int = CHUNKSIZE,
 		initial_seed: int = 12345,
+		use_fast_filter: bool = True,
 	) -> None:
 		self.measurements = measurements
 		self.dot_inputs = [(measure.r, measure.f) for measure in self.measurements]
@@ -93,7 +116,11 @@ class RealSpectrumRun:
 		self.probabilities = [1 / self.model_count] * self.model_count

 		timestamp = datetime.datetime.now().strftime("%Y%m%d-%H%M%S")
-		self.filename = f"{timestamp}-{filename_slug}.realdata.bayesrun.csv"
+		self.use_fast_filter = use_fast_filter
+		ff_string = "no_fast_filter"
+		if self.use_fast_filter:
+			ff_string = "fast_filter"
+		self.filename = f"{timestamp}-{filename_slug}.realdata.{ff_string}.bayesrun.csv"
 		self.initial_seed = initial_seed

 	def go(self) -> None:
@@ -133,9 +160,13 @@ class RealSpectrumRun:
 					# that way we get more stuff.
 					seeds = seed_sequence.spawn(self.monte_carlo_cycles)

+					if self.use_fast_filter:
+						result_func = get_a_result_fast_filter
+					else:
+						result_func = get_a_result
 					current_success = sum(
 						pool.imap_unordered(
-							get_a_result,
+							result_func,
 							[
 								(
 									model,
--- a/poetry.lock
+++ b/poetry.lock
@@ -117,14 +117,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

 [[package]]
 name = "coverage"
-version = "6.3.3"
+version = "6.4.1"
 description = "Code coverage measurement for Python"
 category = "dev"
 optional = false
 python-versions = ">=3.7"

 [package.dependencies]
-tomli = {version = "*", optional = true, markers = "extra == \"toml\""}
+tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}

 [package.extras]
 toml = ["tomli"]
@@ -282,7 +282,7 @@ python-versions = "*"

 [[package]]
 name = "mypy"
-version = "0.950"
+version = "0.961"
 description = "Optional static typing for Python"
 category = "dev"
 optional = false
@@ -335,7 +335,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"

 [[package]]
 name = "pdme"
-version = "0.8.3"
+version = "0.8.5"
 description = "Python dipole model evaluator"
 category = "main"
 optional = false
@@ -740,7 +740,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-
 [metadata]
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 python-versions = "^3.8,<3.10"
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+content-hash = "0196604b0dfc7b3dd0bdb19f983358ef9934d47f3c209dbbc7d07712ac5f779d"

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@@ -1025,8 +1025,8 @@ pathspec = [
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--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,18 +1,18 @@
 [tool.poetry]
 name = "deepdog"
-version = "0.6.1"
+version = "0.6.3"
 description = ""
 authors = ["Deepak Mallubhotla <dmallubhotla+github@gmail.com>"]

 [tool.poetry.dependencies]
 python = "^3.8,<3.10"
-pdme = "^0.8.3"
+pdme = "^0.8.5"

 [tool.poetry.dev-dependencies]
 pytest = ">=6"
 flake8 = "^4.0.1"
 pytest-cov = "^3.0.0"
-mypy = "^0.950"
+mypy = "^0.961"
 python-semantic-release = "^7.24.0"
 black = "^22.3.0"
Author	SHA1	Message	Date
Deepak Mallubhotla	e9dd21f69b	chore(release): 0.6.3 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2022-06-12 17:35:08 -05:00
Deepak Mallubhotla	01ba4af229	Merge pull request 'fastfilter' (#14 ) from fastfilter into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #14	2022-06-12 13:51:47 +00:00
Deepak Mallubhotla	2c5c122820	feat: adds fast filter variant All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2022-06-11 21:06:27 -05:00
Deepak Mallubhotla	0a1a27759b	feat: adds tester for fast filter real spectrum	2022-06-11 12:40:32 -05:00
Deepak Mallubhotla	558a4df643	Merge pull request 'chore(deps): update dependency mypy to ^0.961' (#13 ) from renovate/mypy-0.x into master Some checks reported errors gitea-physics/deepdog/pipeline/head Something is wrong with the build of this commit Details Reviewed-on: #13	2022-06-07 22:03:11 +00:00
Renovate Bot	6f141af0fe	chore(deps): update dependency mypy to ^0.961 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2022-06-07 01:31:28 +00:00
Deepak Mallubhotla	2c99fcf687	deps: updates pdme All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2022-06-04 12:33:05 -05:00
Deepak Mallubhotla	ad0ace4da3	chore(release): 0.6.2 Some checks reported errors gitea-physics/deepdog/pipeline/tag This commit looks good Details gitea-physics/deepdog/pipeline/head Something is wrong with the build of this commit Details	2022-05-26 13:05:14 -05:00
Deepak Mallubhotla	3f1265e3ec	Merge branch 'master' of ssh://gitea.deepak.science:2222/physics/deepdog All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2022-05-26 13:04:28 -05:00
Deepak Mallubhotla	969f01e9c5	deps: updates deps	2022-05-26 13:02:21 -05:00
Deepak Mallubhotla	b282ffa800	Merge pull request 'chore(deps): update dependency mypy to ^0.960' (#12 ) from renovate/mypy-0.x into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #12	2022-05-26 12:48:42 +00:00
Renovate Bot	91e9e5198e	chore(deps): update dependency mypy to ^0.960 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2022-05-26 01:32:51 +00:00
Deepak Mallubhotla	d7e0f13ca5	feat: adds better import api for real data run All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2022-05-22 16:47:26 -05:00