chore(deps): update dependency numpy to v1.24.3

Reviewed-on: #29

CHANGELOG.md

@@ -2,6 +2,19 @@
 
 All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.
 
+### [0.6.7](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.6...0.6.7) (2023-04-14)
+
+
+### Features
+
+* adds option to cap core count for real spectrum run ([bf15f4a](https://gitea.deepak.science:2222/physics/deepdog/commit/bf15f4a7b7f59504983624e7d512ed7474372032))
+* adds option to cap core count for temp aware run ([12903b2](https://gitea.deepak.science:2222/physics/deepdog/commit/12903b2540cefb040174d230bc0d04719a6dc1b7))
+
+
+### Bug Fixes
+
+* avoids redefinition of core count in loop ([1cf4454](https://gitea.deepak.science:2222/physics/deepdog/commit/1cf44541531541088198bd4599d467df3e1acbcf))
+
 ### [0.6.6](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.5...0.6.6) (2023-04-09)
 
 

deepdog/real_spectrum_run.py

@@ -88,6 +88,7 @@ class RealSpectrumRun:
 		chunksize: int = CHUNKSIZE,
 		initial_seed: int = 12345,
 		use_fast_filter: bool = True,
+		cap_core_count: int = 0,
 	) -> None:
 		self.measurements = measurements
 		self.dot_inputs = [(measure.r, measure.f) for measure in self.measurements]
@@ -123,6 +124,8 @@ class RealSpectrumRun:
 		self.filename = f"{timestamp}-{filename_slug}.realdata.{ff_string}.bayesrun.csv"
 		self.initial_seed = initial_seed
 
+		self.cap_core_count = cap_core_count
+
 	def go(self) -> None:
 		with open(self.filename, "a", newline="") as outfile:
 			writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
@@ -140,11 +143,14 @@ class RealSpectrumRun:
 
 		results = []
 		_logger.debug("Going to iterate over models now")
+		core_count = multiprocessing.cpu_count() - 1 or 1
+		if (self.cap_core_count >= 1) and (self.cap_core_count < core_count):
+			core_count = self.cap_core_count
+		_logger.info(f"Using {core_count} cores")
 		for model_count, (model, model_name) in enumerate(
 			zip(self.models, self.model_names)
 		):
 			_logger.debug(f"Doing model #{model_count}: {model_name}")
-			core_count = multiprocessing.cpu_count() - 1 or 1
 			with multiprocessing.Pool(core_count) as pool:
 				cycle_count = 0
 				cycle_success = 0

deepdog/temp_aware_real_spectrum_run.py

@@ -90,6 +90,7 @@ class TempAwareRealSpectrumRun:
 		max_monte_carlo_cycles_steps: int = 10,
 		chunksize: int = CHUNKSIZE,
 		initial_seed: int = 12345,
+		cap_core_count: int = 0,
 	) -> None:
 		self.measurements_dict = measurements_dict
 		self.dot_inputs_dict = {
@@ -126,6 +127,8 @@ class TempAwareRealSpectrumRun:
 		self.filename = f"{timestamp}-{filename_slug}.realdata.{ff_string}.bayesrun.csv"
 		self.initial_seed = initial_seed
 
+		self.cap_core_count = cap_core_count
+
 	def go(self) -> None:
 		with open(self.filename, "a", newline="") as outfile:
 			writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
@@ -146,11 +149,14 @@ class TempAwareRealSpectrumRun:
 
 		results = []
 		_logger.debug("Going to iterate over models now")
+		core_count = multiprocessing.cpu_count() - 1 or 1
+		if (self.cap_core_count >= 1) and (self.cap_core_count < core_count):
+			core_count = self.cap_core_count
+		_logger.info(f"Using {core_count} cores")
 		for model_count, (model, model_name) in enumerate(
 			zip(self.models, self.model_names)
 		):
 			_logger.debug(f"Doing model #{model_count}: {model_name}")
-			core_count = multiprocessing.cpu_count() - 1 or 1
 			with multiprocessing.Pool(core_count) as pool:
 				cycle_count = 0
 				cycle_success = 0

poetry.lock

@@ -336,8 +336,8 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "numpy"
-version = "1.22.3"
-description = "NumPy is the fundamental package for array computing with Python."
+version = "1.24.3"
+description = "Fundamental package for array computing in Python"
 category = "main"
 optional = false
 python-versions = ">=3.8"
@@ -730,7 +730,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-co
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.8,<3.10"
-content-hash = "d32b74325a18dc187501980f37d128a2a07d7bb0e4ea2c5cb14cf14f8b7a0222"
+content-hash = "46c94d4790cfa4680510e79ed4ff7f99c58a0859d8c66227b0fc420b7aefc098"
 
 [metadata.files]
 black = []
@@ -738,10 +738,7 @@ bleach = []
 certifi = []
 cffi = []
 charset-normalizer = []
-click = [
-    {file = "click-8.1.3-py3-none-any.whl", hash = "sha256:bb4d8133cb15a609f44e8213d9b391b0809795062913b383c62be0ee95b1db48"},
-    {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
-]
+click = []
 click-log = []
 colorama = []
 coverage = []
@@ -749,10 +746,7 @@ cryptography = []
 docutils = []
 dotty-dict = []
 exceptiongroup = []
-flake8 = [
-    {file = "flake8-4.0.1-py2.py3-none-any.whl", hash = "sha256:479b1304f72536a55948cb40a32dce8bb0ffe3501e26eaf292c7e60eb5e0428d"},
-    {file = "flake8-4.0.1.tar.gz", hash = "sha256:806e034dda44114815e23c16ef92f95c91e4c71100ff52813adf7132a6ad870d"},
-]
+flake8 = []
 gitdb = []
 gitpython = []
 idna = []
@@ -763,103 +757,40 @@ invoke = []
 "jaraco.classes" = []
 jeepney = []
 keyring = []
-mccabe = [
-    {file = "mccabe-0.6.1-py2.py3-none-any.whl", hash = "sha256:ab8a6258860da4b6677da4bd2fe5dc2c659cff31b3ee4f7f5d64e79735b80d42"},
-    {file = "mccabe-0.6.1.tar.gz", hash = "sha256:dd8d182285a0fe56bace7f45b5e7d1a6ebcbf524e8f3bd87eb0f125271b8831f"},
-]
+mccabe = []
 more-itertools = []
 mypy = []
 mypy-extensions = []
-numpy = [
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-    {file = "numpy-1.22.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8251ed96f38b47b4295b1ae51631de7ffa8260b5b087808ef09a39a9d66c97ab"},
-    {file = "numpy-1.22.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:48a3aecd3b997bf452a2dedb11f4e79bc5bfd21a1d4cc760e703c31d57c84b3e"},
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-]
+numpy = []
 packaging = []
 pathspec = []
 pdme = []
 pkginfo = []
 platformdirs = []
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 pygments = []
 pytest = []
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 python-gitlab = []
 python-semantic-release = []
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 readme-renderer = []
 requests = []
 requests-toolbelt = []
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+semver = []
+six = []
+smmap = []
+tomli = []
 tomlkit = []
 tqdm = []
-twine = [
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 typing-extensions = []
 urllib3 = []
-webencodings = [
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 zipp = []

pyproject.toml

@@ -1,13 +1,13 @@
 [tool.poetry]
 name = "deepdog"
-version = "0.6.6"
+version = "0.6.7"
 description = ""
 authors = ["Deepak Mallubhotla <dmallubhotla+github@gmail.com>"]
 
 [tool.poetry.dependencies]
 python = "^3.8,<3.10"
 pdme = "^0.8.6"
-numpy = "1.22.3"
+numpy = "1.24.3"
 scipy = "1.10"
 
 [tool.poetry.dev-dependencies]