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14
CHANGELOG.md
14
CHANGELOG.md
@ -2,6 +2,20 @@
|
||||
|
||||
All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.
|
||||
|
||||
### [0.6.6](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.5...0.6.6) (2023-04-09)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* removes bad logging in multiprocessing function ([8fd1b75](https://gitea.deepak.science:2222/physics/deepdog/commit/8fd1b75e1378301210bfa8f14dd09174bbd21414))
|
||||
|
||||
### [0.6.5](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.4...0.6.5) (2023-04-09)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* adds temp aware guy using new pdme temp-flexible feature for bundling temp models ([de1ec3e](https://gitea.deepak.science:2222/physics/deepdog/commit/de1ec3e70062d418e0d4c89716905cc9313d2e26))
|
||||
|
||||
### [0.6.4](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.3...0.6.4) (2022-08-13)
|
||||
|
||||
|
||||
|
||||
20
Jenkinsfile
vendored
20
Jenkinsfile
vendored
@ -4,7 +4,7 @@ pipeline {
|
||||
label 'deepdog' // all your pods will be named with this prefix, followed by a unique id
|
||||
idleMinutes 5 // how long the pod will live after no jobs have run on it
|
||||
yamlFile 'jenkins/ci-agent-pod.yaml' // path to the pod definition relative to the root of our project
|
||||
defaultContainer 'python' // define a default container if more than a few stages use it, will default to jnlp container
|
||||
defaultContainer 'poetry' // define a default container if more than a few stages use it, will default to jnlp container
|
||||
}
|
||||
}
|
||||
|
||||
@ -12,36 +12,30 @@ pipeline {
|
||||
parallelsAlwaysFailFast()
|
||||
}
|
||||
|
||||
environment {
|
||||
POETRY_HOME="/opt/poetry"
|
||||
POETRY_VERSION="1.1.12"
|
||||
}
|
||||
|
||||
stages {
|
||||
stage('Build') {
|
||||
steps {
|
||||
echo 'Building...'
|
||||
sh 'python --version'
|
||||
sh 'curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python'
|
||||
sh '${POETRY_HOME}/bin/poetry --version'
|
||||
sh '${POETRY_HOME}/bin/poetry install'
|
||||
sh 'poetry --version'
|
||||
sh 'poetry install'
|
||||
}
|
||||
}
|
||||
stage('Test') {
|
||||
parallel{
|
||||
stage('pytest') {
|
||||
steps {
|
||||
sh '${POETRY_HOME}/bin/poetry run pytest'
|
||||
sh 'poetry run pytest'
|
||||
}
|
||||
}
|
||||
stage('lint') {
|
||||
steps {
|
||||
sh '${POETRY_HOME}/bin/poetry run flake8 deepdog tests'
|
||||
sh 'poetry run flake8 deepdog tests'
|
||||
}
|
||||
}
|
||||
stage('mypy') {
|
||||
steps {
|
||||
sh '${POETRY_HOME}/bin/poetry run mypy deepdog'
|
||||
sh 'poetry run mypy deepdog'
|
||||
}
|
||||
}
|
||||
}
|
||||
@ -57,7 +51,7 @@ pipeline {
|
||||
}
|
||||
steps {
|
||||
echo 'Deploying...'
|
||||
sh '${POETRY_HOME}/bin/poetry publish -u ${PYPI_USR} -p ${PYPI_PSW} --build'
|
||||
sh 'poetry publish -u ${PYPI_USR} -p ${PYPI_PSW} --build'
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@ -5,7 +5,7 @@
|
||||
[](https://jenkins.deepak.science/job/gitea-physics/job/deepdog/job/master/)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
The DiPole DiaGnostic tool.
|
||||
|
||||
|
||||
@ -3,6 +3,7 @@ from deepdog.meta import __version__
|
||||
from deepdog.bayes_run import BayesRun
|
||||
from deepdog.bayes_run_simulpairs import BayesRunSimulPairs
|
||||
from deepdog.real_spectrum_run import RealSpectrumRun
|
||||
from deepdog.temp_aware_real_spectrum_run import TempAwareRealSpectrumRun
|
||||
|
||||
|
||||
def get_version():
|
||||
@ -14,6 +15,7 @@ __all__ = [
|
||||
"BayesRun",
|
||||
"BayesRunSimulPairs",
|
||||
"RealSpectrumRun",
|
||||
"TempAwareRealSpectrumRun",
|
||||
]
|
||||
|
||||
|
||||
|
||||
225
deepdog/temp_aware_real_spectrum_run.py
Normal file
225
deepdog/temp_aware_real_spectrum_run.py
Normal file
@ -0,0 +1,225 @@
|
||||
import pdme.inputs
|
||||
import pdme.model
|
||||
import pdme.measurement
|
||||
import pdme.measurement.input_types
|
||||
import pdme.measurement.oscillating_dipole
|
||||
import pdme.util.fast_v_calc
|
||||
import pdme.util.fast_nonlocal_spectrum
|
||||
from typing import Sequence, Tuple, List, Dict, Union, Mapping
|
||||
import datetime
|
||||
import csv
|
||||
import multiprocessing
|
||||
import logging
|
||||
import numpy
|
||||
|
||||
|
||||
# TODO: remove hardcode
|
||||
CHUNKSIZE = 50
|
||||
|
||||
|
||||
_logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def get_a_result_fast_filter(input) -> int:
|
||||
# (
|
||||
# model,
|
||||
# self.dot_inputs_array_dict,
|
||||
# low_high_dict,
|
||||
# self.monte_carlo_count,
|
||||
# seed,
|
||||
# )
|
||||
model, dot_inputs_dict, low_high_dict, monte_carlo_count, seed = input
|
||||
|
||||
rng = numpy.random.default_rng(seed)
|
||||
# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
|
||||
sample_dipoles = model.get_monte_carlo_dipole_inputs(
|
||||
monte_carlo_count, None, rng_to_use=rng
|
||||
)
|
||||
|
||||
current_sample = sample_dipoles
|
||||
for temp in dot_inputs_dict.keys():
|
||||
dot_inputs = dot_inputs_dict[temp]
|
||||
lows, highs = low_high_dict[temp]
|
||||
for di, low, high in zip(dot_inputs, lows, highs):
|
||||
|
||||
if len(current_sample) < 1:
|
||||
break
|
||||
vals = pdme.util.fast_v_calc.fast_vs_for_asymmetric_dipoleses(
|
||||
numpy.array([di]), current_sample, temp
|
||||
)
|
||||
|
||||
current_sample = current_sample[
|
||||
numpy.all((vals > low) & (vals < high), axis=1)
|
||||
]
|
||||
return len(current_sample)
|
||||
|
||||
|
||||
class TempAwareRealSpectrumRun:
|
||||
"""
|
||||
A bayes run given some real data, with potentially variable temperature.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
measurements_dict : Dict[float, Sequence[pdme.measurement.DotRangeMeasurement]]
|
||||
The dot inputs for this bayes run, in a dictionary indexed by temperatures
|
||||
|
||||
models_with_names : models_with_names: Sequence[Tuple[str, pdme.model.DipoleModel]],
|
||||
|
||||
The models to evaluate.
|
||||
|
||||
actual_model : pdme.model.DipoleModel
|
||||
The model which is actually correct.
|
||||
|
||||
filename_slug : str
|
||||
The filename slug to include.
|
||||
|
||||
run_count: int
|
||||
The number of runs to do.
|
||||
"""
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
measurements_dict: Mapping[
|
||||
float, Sequence[pdme.measurement.DotRangeMeasurement]
|
||||
],
|
||||
models_with_names: Sequence[Tuple[str, pdme.model.DipoleModel]],
|
||||
filename_slug: str,
|
||||
monte_carlo_count: int = 10000,
|
||||
monte_carlo_cycles: int = 10,
|
||||
target_success: int = 100,
|
||||
max_monte_carlo_cycles_steps: int = 10,
|
||||
chunksize: int = CHUNKSIZE,
|
||||
initial_seed: int = 12345,
|
||||
) -> None:
|
||||
self.measurements_dict = measurements_dict
|
||||
self.dot_inputs_dict = {
|
||||
k: [(measure.r, measure.f) for measure in measurements]
|
||||
for k, measurements in measurements_dict.items()
|
||||
}
|
||||
|
||||
self.dot_inputs_array_dict = {
|
||||
k: pdme.measurement.input_types.dot_inputs_to_array(dot_inputs)
|
||||
for k, dot_inputs in self.dot_inputs_dict.items()
|
||||
}
|
||||
|
||||
self.models = [model for (_, model) in models_with_names]
|
||||
self.model_names = [name for (name, _) in models_with_names]
|
||||
self.model_count = len(self.models)
|
||||
|
||||
self.monte_carlo_count = monte_carlo_count
|
||||
self.monte_carlo_cycles = monte_carlo_cycles
|
||||
self.target_success = target_success
|
||||
self.max_monte_carlo_cycles_steps = max_monte_carlo_cycles_steps
|
||||
|
||||
self.csv_fields = []
|
||||
|
||||
self.compensate_zeros = True
|
||||
self.chunksize = chunksize
|
||||
for name in self.model_names:
|
||||
self.csv_fields.extend([f"{name}_success", f"{name}_count", f"{name}_prob"])
|
||||
|
||||
# for now initialise priors as uniform.
|
||||
self.probabilities = [1 / self.model_count] * self.model_count
|
||||
|
||||
timestamp = datetime.datetime.now().strftime("%Y%m%d-%H%M%S")
|
||||
ff_string = "fast_filter"
|
||||
self.filename = f"{timestamp}-{filename_slug}.realdata.{ff_string}.bayesrun.csv"
|
||||
self.initial_seed = initial_seed
|
||||
|
||||
def go(self) -> None:
|
||||
with open(self.filename, "a", newline="") as outfile:
|
||||
writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
|
||||
writer.writeheader()
|
||||
|
||||
low_high_dict = {}
|
||||
for temp, measurements in self.measurements_dict.items():
|
||||
(
|
||||
lows,
|
||||
highs,
|
||||
) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
|
||||
measurements
|
||||
)
|
||||
low_high_dict[temp] = (lows, highs)
|
||||
|
||||
# define a new seed sequence for each run
|
||||
seed_sequence = numpy.random.SeedSequence(self.initial_seed)
|
||||
|
||||
results = []
|
||||
_logger.debug("Going to iterate over models now")
|
||||
for model_count, (model, model_name) in enumerate(
|
||||
zip(self.models, self.model_names)
|
||||
):
|
||||
_logger.debug(f"Doing model #{model_count}: {model_name}")
|
||||
core_count = multiprocessing.cpu_count() - 1 or 1
|
||||
with multiprocessing.Pool(core_count) as pool:
|
||||
cycle_count = 0
|
||||
cycle_success = 0
|
||||
cycles = 0
|
||||
while (cycles < self.max_monte_carlo_cycles_steps) and (
|
||||
cycle_success <= self.target_success
|
||||
):
|
||||
_logger.debug(f"Starting cycle {cycles}")
|
||||
cycles += 1
|
||||
current_success = 0
|
||||
cycle_count += self.monte_carlo_count * self.monte_carlo_cycles
|
||||
|
||||
# generate a seed from the sequence for each core.
|
||||
# note this needs to be inside the loop for monte carlo cycle steps!
|
||||
# that way we get more stuff.
|
||||
seeds = seed_sequence.spawn(self.monte_carlo_cycles)
|
||||
|
||||
result_func = get_a_result_fast_filter
|
||||
|
||||
current_success = sum(
|
||||
pool.imap_unordered(
|
||||
result_func,
|
||||
[
|
||||
(
|
||||
model,
|
||||
self.dot_inputs_array_dict,
|
||||
low_high_dict,
|
||||
self.monte_carlo_count,
|
||||
seed,
|
||||
)
|
||||
for seed in seeds
|
||||
],
|
||||
self.chunksize,
|
||||
)
|
||||
)
|
||||
|
||||
cycle_success += current_success
|
||||
_logger.debug(f"current running successes: {cycle_success}")
|
||||
results.append((cycle_count, cycle_success))
|
||||
|
||||
_logger.debug("Done, constructing output now")
|
||||
row: Dict[str, Union[int, float, str]] = {}
|
||||
|
||||
successes: List[float] = []
|
||||
counts: List[int] = []
|
||||
for model_index, (name, (count, result)) in enumerate(
|
||||
zip(self.model_names, results)
|
||||
):
|
||||
|
||||
row[f"{name}_success"] = result
|
||||
row[f"{name}_count"] = count
|
||||
successes.append(max(result, 0.5))
|
||||
counts.append(count)
|
||||
|
||||
success_weight = sum(
|
||||
[
|
||||
(succ / count) * prob
|
||||
for succ, count, prob in zip(successes, counts, self.probabilities)
|
||||
]
|
||||
)
|
||||
new_probabilities = [
|
||||
(succ / count) * old_prob / success_weight
|
||||
for succ, count, old_prob in zip(successes, counts, self.probabilities)
|
||||
]
|
||||
self.probabilities = new_probabilities
|
||||
for name, probability in zip(self.model_names, self.probabilities):
|
||||
row[f"{name}_prob"] = probability
|
||||
_logger.info(row)
|
||||
|
||||
with open(self.filename, "a", newline="") as outfile:
|
||||
writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
|
||||
writer.writerow(row)
|
||||
@ -1,9 +1,11 @@
|
||||
apiVersion: v1
|
||||
kind: Pod
|
||||
spec:
|
||||
imagePullSecrets:
|
||||
- name: regcreds
|
||||
containers: # list of containers that you want present for your build, you can define a default container in the Jenkinsfile
|
||||
- name: python
|
||||
image: python:3.8
|
||||
- name: poetry
|
||||
image: ghcr.io/dmallubhotla/poetry-image:1
|
||||
command: ["tail", "-f", "/dev/null"] # this or any command that is bascially a noop is required, this is so that you don't overwrite the entrypoint of the base container
|
||||
imagePullPolicy: Always # use cache or pull image for agent
|
||||
resources: # limits the resources your build contaienr
|
||||
|
||||
319
poetry.lock
generated
319
poetry.lock
generated
@ -1,39 +1,17 @@
|
||||
[[package]]
|
||||
name = "atomicwrites"
|
||||
version = "1.4.0"
|
||||
description = "Atomic file writes."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
|
||||
|
||||
[[package]]
|
||||
name = "attrs"
|
||||
version = "21.4.0"
|
||||
description = "Classes Without Boilerplate"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
|
||||
|
||||
[package.extras]
|
||||
dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
|
||||
docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
|
||||
tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
|
||||
tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
|
||||
|
||||
[[package]]
|
||||
name = "black"
|
||||
version = "22.3.0"
|
||||
version = "22.12.0"
|
||||
description = "The uncompromising code formatter."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6.2"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
click = ">=8.0.0"
|
||||
mypy-extensions = ">=0.4.3"
|
||||
pathspec = ">=0.9.0"
|
||||
platformdirs = ">=2"
|
||||
tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
|
||||
tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
|
||||
typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
|
||||
|
||||
[package.extras]
|
||||
@ -44,7 +22,7 @@ uvloop = ["uvloop (>=0.15.2)"]
|
||||
|
||||
[[package]]
|
||||
name = "bleach"
|
||||
version = "5.0.0"
|
||||
version = "6.0.0"
|
||||
description = "An easy safelist-based HTML-sanitizing tool."
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -55,12 +33,11 @@ six = ">=1.9.0"
|
||||
webencodings = "*"
|
||||
|
||||
[package.extras]
|
||||
css = ["tinycss2 (>=1.1.0)"]
|
||||
dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"]
|
||||
css = ["tinycss2 (>=1.1.0,<1.2)"]
|
||||
|
||||
[[package]]
|
||||
name = "certifi"
|
||||
version = "2022.5.18.1"
|
||||
version = "2022.12.7"
|
||||
description = "Python package for providing Mozilla's CA Bundle."
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -68,7 +45,7 @@ python-versions = ">=3.6"
|
||||
|
||||
[[package]]
|
||||
name = "cffi"
|
||||
version = "1.15.0"
|
||||
version = "1.15.1"
|
||||
description = "Foreign Function Interface for Python calling C code."
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -79,14 +56,11 @@ pycparser = "*"
|
||||
|
||||
[[package]]
|
||||
name = "charset-normalizer"
|
||||
version = "2.0.12"
|
||||
version = "3.1.0"
|
||||
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.5.0"
|
||||
|
||||
[package.extras]
|
||||
unicode_backport = ["unicodedata2"]
|
||||
python-versions = ">=3.7.0"
|
||||
|
||||
[[package]]
|
||||
name = "click"
|
||||
@ -112,15 +86,15 @@ click = "*"
|
||||
|
||||
[[package]]
|
||||
name = "colorama"
|
||||
version = "0.4.4"
|
||||
version = "0.4.6"
|
||||
description = "Cross-platform colored terminal text."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
|
||||
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
|
||||
|
||||
[[package]]
|
||||
name = "coverage"
|
||||
version = "6.4.4"
|
||||
version = "7.2.3"
|
||||
description = "Code coverage measurement for Python"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -134,7 +108,7 @@ toml = ["tomli"]
|
||||
|
||||
[[package]]
|
||||
name = "cryptography"
|
||||
version = "37.0.2"
|
||||
version = "40.0.1"
|
||||
description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -144,31 +118,41 @@ python-versions = ">=3.6"
|
||||
cffi = ">=1.12"
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"]
|
||||
docs = ["sphinx (>=5.3.0)", "sphinx-rtd-theme (>=1.1.1)"]
|
||||
docstest = ["pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
|
||||
pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"]
|
||||
sdist = ["setuptools_rust (>=0.11.4)"]
|
||||
pep8test = ["black", "ruff", "mypy", "check-manifest"]
|
||||
sdist = ["setuptools-rust (>=0.11.4)"]
|
||||
ssh = ["bcrypt (>=3.1.5)"]
|
||||
test = ["pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-subtests", "pytest-xdist", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,!=3.79.2)"]
|
||||
test = ["pytest (>=6.2.0)", "pytest-shard (>=0.1.2)", "pytest-benchmark", "pytest-cov", "pytest-subtests", "pytest-xdist", "pretend", "iso8601"]
|
||||
test-randomorder = ["pytest-randomly"]
|
||||
tox = ["tox"]
|
||||
|
||||
[[package]]
|
||||
name = "docutils"
|
||||
version = "0.18.1"
|
||||
version = "0.19"
|
||||
description = "Docutils -- Python Documentation Utilities"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "dotty-dict"
|
||||
version = "1.3.0"
|
||||
version = "1.3.1"
|
||||
description = "Dictionary wrapper for quick access to deeply nested keys."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
python-versions = ">=3.5,<4.0"
|
||||
|
||||
[package.dependencies]
|
||||
setuptools_scm = "*"
|
||||
[[package]]
|
||||
name = "exceptiongroup"
|
||||
version = "1.1.1"
|
||||
description = "Backport of PEP 654 (exception groups)"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.extras]
|
||||
test = ["pytest (>=6)"]
|
||||
|
||||
[[package]]
|
||||
name = "flake8"
|
||||
@ -185,19 +169,19 @@ pyflakes = ">=2.4.0,<2.5.0"
|
||||
|
||||
[[package]]
|
||||
name = "gitdb"
|
||||
version = "4.0.9"
|
||||
version = "4.0.10"
|
||||
description = "Git Object Database"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
smmap = ">=3.0.1,<6"
|
||||
|
||||
[[package]]
|
||||
name = "gitpython"
|
||||
version = "3.1.27"
|
||||
description = "GitPython is a python library used to interact with Git repositories"
|
||||
version = "3.1.31"
|
||||
description = "GitPython is a Python library used to interact with Git repositories"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
@ -207,7 +191,7 @@ gitdb = ">=4.0.1,<5"
|
||||
|
||||
[[package]]
|
||||
name = "idna"
|
||||
version = "3.3"
|
||||
version = "3.4"
|
||||
description = "Internationalized Domain Names in Applications (IDNA)"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -215,7 +199,7 @@ python-versions = ">=3.5"
|
||||
|
||||
[[package]]
|
||||
name = "importlib-metadata"
|
||||
version = "4.11.4"
|
||||
version = "6.2.1"
|
||||
description = "Read metadata from Python packages"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -225,26 +209,56 @@ python-versions = ">=3.7"
|
||||
zipp = ">=0.5"
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
||||
perf = ["ipython"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8", "importlib-resources (>=1.3)"]
|
||||
|
||||
[[package]]
|
||||
name = "importlib-resources"
|
||||
version = "5.12.0"
|
||||
description = "Read resources from Python packages"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
|
||||
|
||||
[[package]]
|
||||
name = "iniconfig"
|
||||
version = "1.1.1"
|
||||
description = "iniconfig: brain-dead simple config-ini parsing"
|
||||
version = "2.0.0"
|
||||
description = "brain-dead simple config-ini parsing"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "invoke"
|
||||
version = "1.7.1"
|
||||
version = "1.7.3"
|
||||
description = "Pythonic task execution"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "jaraco.classes"
|
||||
version = "3.2.3"
|
||||
description = "Utility functions for Python class constructs"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
more-itertools = "*"
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
|
||||
|
||||
[[package]]
|
||||
name = "jeepney"
|
||||
version = "0.8.0"
|
||||
@ -254,26 +268,29 @@ optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.extras]
|
||||
trio = ["async-generator", "trio"]
|
||||
test = ["async-timeout", "trio", "testpath", "pytest-asyncio (>=0.17)", "pytest-trio", "pytest"]
|
||||
test = ["pytest", "pytest-trio", "pytest-asyncio (>=0.17)", "testpath", "trio", "async-timeout"]
|
||||
trio = ["trio", "async-generator"]
|
||||
|
||||
[[package]]
|
||||
name = "keyring"
|
||||
version = "23.6.0"
|
||||
version = "23.13.1"
|
||||
description = "Store and access your passwords safely."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""}
|
||||
importlib-metadata = {version = ">=4.11.4", markers = "python_version < \"3.12\""}
|
||||
importlib-resources = {version = "*", markers = "python_version < \"3.9\""}
|
||||
"jaraco.classes" = "*"
|
||||
jeepney = {version = ">=0.4.2", markers = "sys_platform == \"linux\""}
|
||||
pywin32-ctypes = {version = "<0.1.0 || >0.1.0,<0.1.1 || >0.1.1", markers = "sys_platform == \"win32\""}
|
||||
pywin32-ctypes = {version = ">=0.2.0", markers = "sys_platform == \"win32\""}
|
||||
SecretStorage = {version = ">=3.2", markers = "sys_platform == \"linux\""}
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
|
||||
completion = ["shtab"]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
|
||||
|
||||
[[package]]
|
||||
name = "mccabe"
|
||||
@ -283,6 +300,14 @@ category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "more-itertools"
|
||||
version = "9.1.0"
|
||||
description = "More routines for operating on iterables, beyond itertools"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "mypy"
|
||||
version = "0.971"
|
||||
@ -303,11 +328,11 @@ reports = ["lxml"]
|
||||
|
||||
[[package]]
|
||||
name = "mypy-extensions"
|
||||
version = "0.4.3"
|
||||
description = "Experimental type system extensions for programs checked with the mypy typechecker."
|
||||
version = "1.0.0"
|
||||
description = "Type system extensions for programs checked with the mypy type checker."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
python-versions = ">=3.5"
|
||||
|
||||
[[package]]
|
||||
name = "numpy"
|
||||
@ -319,26 +344,23 @@ python-versions = ">=3.8"
|
||||
|
||||
[[package]]
|
||||
name = "packaging"
|
||||
version = "21.3"
|
||||
version = "23.0"
|
||||
description = "Core utilities for Python packages"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[package.dependencies]
|
||||
pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "pathspec"
|
||||
version = "0.9.0"
|
||||
version = "0.11.1"
|
||||
description = "Utility library for gitignore style pattern matching of file paths."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "pdme"
|
||||
version = "0.8.6"
|
||||
version = "0.8.8"
|
||||
description = "Python dipole model evaluator"
|
||||
category = "main"
|
||||
optional = false
|
||||
@ -346,30 +368,30 @@ python-versions = ">=3.8,<3.10"
|
||||
|
||||
[package.dependencies]
|
||||
numpy = ">=1.22.3,<2.0.0"
|
||||
scipy = ">=1.8,<1.9"
|
||||
scipy = ">=1.10,<1.11"
|
||||
|
||||
[[package]]
|
||||
name = "pkginfo"
|
||||
version = "1.8.3"
|
||||
description = "Query metadatdata from sdists / bdists / installed packages."
|
||||
version = "1.9.6"
|
||||
description = "Query metadata from sdists / bdists / installed packages."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[package.extras]
|
||||
testing = ["nose", "coverage"]
|
||||
testing = ["pytest", "pytest-cov"]
|
||||
|
||||
[[package]]
|
||||
name = "platformdirs"
|
||||
version = "2.5.2"
|
||||
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
|
||||
version = "3.2.0"
|
||||
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.extras]
|
||||
docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"]
|
||||
test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"]
|
||||
docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)", "sphinx (>=6.1.3)"]
|
||||
test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest (>=7.2.2)"]
|
||||
|
||||
[[package]]
|
||||
name = "pluggy"
|
||||
@ -380,16 +402,8 @@ optional = false
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[package.extras]
|
||||
testing = ["pytest-benchmark", "pytest"]
|
||||
dev = ["tox", "pre-commit"]
|
||||
|
||||
[[package]]
|
||||
name = "py"
|
||||
version = "1.11.0"
|
||||
description = "library with cross-python path, ini-parsing, io, code, log facilities"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
|
||||
dev = ["pre-commit", "tox"]
|
||||
testing = ["pytest", "pytest-benchmark"]
|
||||
|
||||
[[package]]
|
||||
name = "pycodestyle"
|
||||
@ -417,43 +431,33 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
|
||||
|
||||
[[package]]
|
||||
name = "pygments"
|
||||
version = "2.12.0"
|
||||
version = "2.14.0"
|
||||
description = "Pygments is a syntax highlighting package written in Python."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[[package]]
|
||||
name = "pyparsing"
|
||||
version = "3.0.9"
|
||||
description = "pyparsing module - Classes and methods to define and execute parsing grammars"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6.8"
|
||||
|
||||
[package.extras]
|
||||
diagrams = ["railroad-diagrams", "jinja2"]
|
||||
plugins = ["importlib-metadata"]
|
||||
|
||||
[[package]]
|
||||
name = "pytest"
|
||||
version = "7.1.2"
|
||||
version = "7.3.0"
|
||||
description = "pytest: simple powerful testing with Python"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
|
||||
attrs = ">=19.2.0"
|
||||
colorama = {version = "*", markers = "sys_platform == \"win32\""}
|
||||
exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
|
||||
iniconfig = "*"
|
||||
packaging = "*"
|
||||
pluggy = ">=0.12,<2.0"
|
||||
py = ">=1.8.2"
|
||||
tomli = ">=1.0.0"
|
||||
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
|
||||
|
||||
[package.extras]
|
||||
testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
|
||||
testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
|
||||
|
||||
[[package]]
|
||||
name = "pytest-cov"
|
||||
@ -472,7 +476,7 @@ testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtuale
|
||||
|
||||
[[package]]
|
||||
name = "python-gitlab"
|
||||
version = "3.5.0"
|
||||
version = "3.13.0"
|
||||
description = "Interact with GitLab API"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -480,7 +484,7 @@ python-versions = ">=3.7.0"
|
||||
|
||||
[package.dependencies]
|
||||
requests = ">=2.25.0"
|
||||
requests-toolbelt = ">=0.9.1"
|
||||
requests-toolbelt = ">=0.10.1"
|
||||
|
||||
[package.extras]
|
||||
autocompletion = ["argcomplete (>=1.10.0,<3)"]
|
||||
@ -488,7 +492,7 @@ yaml = ["PyYaml (>=5.2)"]
|
||||
|
||||
[[package]]
|
||||
name = "python-semantic-release"
|
||||
version = "7.29.1"
|
||||
version = "7.33.2"
|
||||
description = "Automatic Semantic Versioning for Python projects"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -500,17 +504,18 @@ click-log = ">=0.3,<1"
|
||||
dotty-dict = ">=1.3.0,<2"
|
||||
gitpython = ">=3.0.8,<4"
|
||||
invoke = ">=1.4.1,<2"
|
||||
packaging = "*"
|
||||
python-gitlab = ">=2,<4"
|
||||
requests = ">=2.25,<3"
|
||||
semver = ">=2.10,<3"
|
||||
tomlkit = ">=0.10.0,<0.11.0"
|
||||
tomlkit = ">=0.10,<1.0"
|
||||
twine = ">=3,<4"
|
||||
|
||||
[package.extras]
|
||||
dev = ["tox", "isort", "black"]
|
||||
docs = ["Sphinx (==1.3.6)", "Jinja2 (==3.0.3)"]
|
||||
mypy = ["mypy", "types-requests"]
|
||||
test = ["coverage (>=5,<6)", "pytest (>=5,<6)", "pytest-xdist (>=1,<2)", "pytest-mock (>=2,<3)", "responses (==0.13.3)", "mock (==1.3.0)"]
|
||||
test = ["coverage (>=5,<6)", "pytest (>=7,<8)", "pytest-xdist (>=1,<2)", "pytest-mock (>=2,<3)", "responses (==0.13.3)", "mock (==1.3.0)"]
|
||||
|
||||
[[package]]
|
||||
name = "pywin32-ctypes"
|
||||
@ -522,7 +527,7 @@ python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "readme-renderer"
|
||||
version = "35.0"
|
||||
version = "37.3"
|
||||
description = "readme_renderer is a library for rendering \"readme\" descriptions for Warehouse"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -538,7 +543,7 @@ md = ["cmarkgfm (>=0.8.0)"]
|
||||
|
||||
[[package]]
|
||||
name = "requests"
|
||||
version = "2.28.0"
|
||||
version = "2.28.2"
|
||||
description = "Python HTTP for Humans."
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -546,21 +551,21 @@ python-versions = ">=3.7, <4"
|
||||
|
||||
[package.dependencies]
|
||||
certifi = ">=2017.4.17"
|
||||
charset-normalizer = ">=2.0.0,<2.1.0"
|
||||
charset-normalizer = ">=2,<4"
|
||||
idna = ">=2.5,<4"
|
||||
urllib3 = ">=1.21.1,<1.27"
|
||||
|
||||
[package.extras]
|
||||
socks = ["PySocks (>=1.5.6,!=1.5.7)"]
|
||||
use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
|
||||
use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
|
||||
|
||||
[[package]]
|
||||
name = "requests-toolbelt"
|
||||
version = "0.9.1"
|
||||
version = "0.10.1"
|
||||
description = "A utility belt for advanced users of python-requests"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
|
||||
|
||||
[package.dependencies]
|
||||
requests = ">=2.0.1,<3.0.0"
|
||||
@ -578,18 +583,23 @@ idna2008 = ["idna"]
|
||||
|
||||
[[package]]
|
||||
name = "scipy"
|
||||
version = "1.8.0"
|
||||
description = "SciPy: Scientific Library for Python"
|
||||
version = "1.10.0"
|
||||
description = "Fundamental algorithms for scientific computing in Python"
|
||||
category = "main"
|
||||
optional = false
|
||||
python-versions = ">=3.8,<3.11"
|
||||
python-versions = "<3.12,>=3.8"
|
||||
|
||||
[package.dependencies]
|
||||
numpy = ">=1.17.3,<1.25.0"
|
||||
numpy = ">=1.19.5,<1.27.0"
|
||||
|
||||
[package.extras]
|
||||
test = ["pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "asv", "mpmath", "gmpy2", "threadpoolctl", "scikit-umfpack", "pooch"]
|
||||
doc = ["sphinx (!=4.1.0)", "pydata-sphinx-theme (==0.9.0)", "sphinx-design (>=0.2.0)", "matplotlib (>2)", "numpydoc"]
|
||||
dev = ["mypy", "typing-extensions", "pycodestyle", "flake8", "rich-click", "click", "doit (>=0.36.0)", "pydevtool"]
|
||||
|
||||
[[package]]
|
||||
name = "secretstorage"
|
||||
version = "3.3.2"
|
||||
version = "3.3.3"
|
||||
description = "Python bindings to FreeDesktop.org Secret Service API"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -607,22 +617,6 @@ category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
|
||||
|
||||
[[package]]
|
||||
name = "setuptools-scm"
|
||||
version = "6.4.2"
|
||||
description = "the blessed package to manage your versions by scm tags"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[package.dependencies]
|
||||
packaging = ">=20.0"
|
||||
tomli = ">=1.0.0"
|
||||
|
||||
[package.extras]
|
||||
test = ["pytest (>=6.2)", "virtualenv (>20)"]
|
||||
toml = ["setuptools (>=42)"]
|
||||
|
||||
[[package]]
|
||||
name = "six"
|
||||
version = "1.16.0"
|
||||
@ -649,19 +643,19 @@ python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "tomlkit"
|
||||
version = "0.10.2"
|
||||
version = "0.11.7"
|
||||
description = "Style preserving TOML library"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6,<4.0"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "tqdm"
|
||||
version = "4.64.0"
|
||||
version = "4.65.0"
|
||||
description = "Fast, Extensible Progress Meter"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
colorama = {version = "*", markers = "platform_system == \"Windows\""}
|
||||
@ -694,7 +688,7 @@ urllib3 = ">=1.26.0"
|
||||
|
||||
[[package]]
|
||||
name = "typing-extensions"
|
||||
version = "4.2.0"
|
||||
version = "4.5.0"
|
||||
description = "Backported and Experimental Type Hints for Python 3.7+"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -702,15 +696,15 @@ python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "urllib3"
|
||||
version = "1.26.9"
|
||||
version = "1.26.15"
|
||||
description = "HTTP library with thread-safe connection pooling, file post, and more."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
|
||||
|
||||
[package.extras]
|
||||
brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
|
||||
secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
|
||||
secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "urllib3-secure-extra", "ipaddress"]
|
||||
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
|
||||
|
||||
[[package]]
|
||||
@ -723,24 +717,22 @@ python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "zipp"
|
||||
version = "3.8.0"
|
||||
version = "3.15.0"
|
||||
description = "Backport of pathlib-compatible object wrapper for zip files"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "jaraco.functools", "more-itertools", "big-o", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
|
||||
|
||||
[metadata]
|
||||
lock-version = "1.1"
|
||||
python-versions = "^3.8,<3.10"
|
||||
content-hash = "e35d1a59355989fe327643c99f6789b5c5c9e4aa9e60932c5114641211d750c8"
|
||||
content-hash = "38342cfa86d08bc198ec9337b1e5f2cdd10cd372852cd73b2b079d45dffa0c6f"
|
||||
|
||||
[metadata.files]
|
||||
atomicwrites = []
|
||||
attrs = []
|
||||
black = []
|
||||
bleach = []
|
||||
certifi = []
|
||||
@ -753,16 +745,20 @@ coverage = []
|
||||
cryptography = []
|
||||
docutils = []
|
||||
dotty-dict = []
|
||||
exceptiongroup = []
|
||||
flake8 = []
|
||||
gitdb = []
|
||||
gitpython = []
|
||||
idna = []
|
||||
importlib-metadata = []
|
||||
importlib-resources = []
|
||||
iniconfig = []
|
||||
invoke = []
|
||||
"jaraco.classes" = []
|
||||
jeepney = []
|
||||
keyring = []
|
||||
mccabe = []
|
||||
more-itertools = []
|
||||
mypy = []
|
||||
mypy-extensions = []
|
||||
numpy = []
|
||||
@ -772,12 +768,10 @@ pdme = []
|
||||
pkginfo = []
|
||||
platformdirs = []
|
||||
pluggy = []
|
||||
py = []
|
||||
pycodestyle = []
|
||||
pycparser = []
|
||||
pyflakes = []
|
||||
pygments = []
|
||||
pyparsing = []
|
||||
pytest = []
|
||||
pytest-cov = []
|
||||
python-gitlab = []
|
||||
@ -790,7 +784,6 @@ rfc3986 = []
|
||||
scipy = []
|
||||
secretstorage = []
|
||||
semver = []
|
||||
setuptools-scm = []
|
||||
six = []
|
||||
smmap = []
|
||||
tomli = []
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
[tool.poetry]
|
||||
name = "deepdog"
|
||||
version = "0.6.4"
|
||||
version = "0.6.6"
|
||||
description = ""
|
||||
authors = ["Deepak Mallubhotla <dmallubhotla+github@gmail.com>"]
|
||||
|
||||
@ -8,7 +8,7 @@ authors = ["Deepak Mallubhotla <dmallubhotla+github@gmail.com>"]
|
||||
python = "^3.8,<3.10"
|
||||
pdme = "^0.8.6"
|
||||
numpy = "1.22.3"
|
||||
scipy = "1.8.0"
|
||||
scipy = "1.10"
|
||||
|
||||
[tool.poetry.dev-dependencies]
|
||||
pytest = ">=6"
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user