deepdog/real_spectrum_run.py

@@ -125,7 +125,7 @@ def get_a_result_fast_filter_tarucha_spin_qubit_pair_phase_only(input) -> int:
 		r1s = dot_pair_inputs[:, 0, 0:3]
 		r2s = dot_pair_inputs[:, 1, 0:3]
 		f1s = dot_pair_inputs[:, 0, 3]
-		# Don't actually need this
+		# don't actually need, because we're assuming they're the same frequencies across the pair
 		# f2s = dot_pair_inputs[:, 1, 3]
 
 		diffses1 = r1s[:, None] - ss[:, None, :]

flake.lock

@@ -1,28 +1,33 @@
 {
   "nodes": {
     "flake-utils": {
+      "inputs": {
+        "systems": "systems"
+      },
       "locked": {
-        "lastModified": 1648297722,
+        "lastModified": 1710146030,
-        "narHash": "sha256-W+qlPsiZd8F3XkzXOzAoR+mpFqzm3ekQkJNa+PIh1BQ=",
+        "narHash": "sha256-SZ5L6eA7HJ/nmkzGG7/ISclqe6oZdOZTNoesiInkXPQ=",
         "owner": "numtide",
         "repo": "flake-utils",
-        "rev": "0f8662f1319ad6abf89b3380dd2722369fc51ade",
+        "rev": "b1d9ab70662946ef0850d488da1c9019f3a9752a",
         "type": "github"
       },
       "original": {
         "owner": "numtide",
         "repo": "flake-utils",
-        "rev": "0f8662f1319ad6abf89b3380dd2722369fc51ade",
         "type": "github"
       }
     },
     "flake-utils_2": {
+      "inputs": {
+        "systems": "systems_2"
+      },
       "locked": {
-        "lastModified": 1653893745,
+        "lastModified": 1705309234,
-        "narHash": "sha256-0jntwV3Z8//YwuOjzhV2sgJJPt+HY6KhU7VZUL0fKZQ=",
+        "narHash": "sha256-uNRRNRKmJyCRC/8y1RqBkqWBLM034y4qN7EprSdmgyA=",
         "owner": "numtide",
         "repo": "flake-utils",
-        "rev": "1ed9fb1935d260de5fe1c2f7ee0ebaae17ed2fa1",
+        "rev": "1ef2e671c3b0c19053962c07dbda38332dcebf26",
         "type": "github"
       },
       "original": {
@@ -31,29 +36,34 @@
         "type": "github"
       }
     },
+    "nix-github-actions": {
+      "inputs": {
+        "nixpkgs": [
+          "poetry2nixSrc",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1703863825,
+        "narHash": "sha256-rXwqjtwiGKJheXB43ybM8NwWB8rO2dSRrEqes0S7F5Y=",
+        "owner": "nix-community",
+        "repo": "nix-github-actions",
+        "rev": "5163432afc817cf8bd1f031418d1869e4c9d5547",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-community",
+        "repo": "nix-github-actions",
+        "type": "github"
+      }
+    },
     "nixpkgs": {
       "locked": {
-        "lastModified": 1655087213,
+        "lastModified": 1710703777,
-        "narHash": "sha256-4R5oQ+OwGAAcXWYrxC4gFMTUSstGxaN8kN7e8hkum/8=",
+        "narHash": "sha256-M4CNAgjrtvrxIWIAc98RTYcVFoAgwUhrYekeiMScj18=",
         "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "37b6b161e536fddca54424cf80662bce735bdd1e",
+        "rev": "fc7885fbcea4b782142e06ce2d4d08cf92862004",
-        "type": "github"
-      },
-      "original": {
-        "owner": "NixOS",
-        "repo": "nixpkgs",
-        "rev": "37b6b161e536fddca54424cf80662bce735bdd1e",
-        "type": "github"
-      }
-    },
-    "nixpkgs_2": {
-      "locked": {
-        "lastModified": 1655046959,
-        "narHash": "sha256-gxqHZKq1ReLDe6ZMJSbmSZlLY95DsVq5o6jQihhzvmw=",
-        "owner": "NixOS",
-        "repo": "nixpkgs",
-        "rev": "07bf3d25ce1da3bee6703657e6a787a4c6cdcea9",
         "type": "github"
       },
       "original": {
@@ -62,23 +72,27 @@
         "type": "github"
       }
     },
-    "poetry2nix": {
+    "poetry2nixSrc": {
       "inputs": {
         "flake-utils": "flake-utils_2",
-        "nixpkgs": "nixpkgs_2"
+        "nix-github-actions": "nix-github-actions",
+        "nixpkgs": [
+          "nixpkgs"
+        ],
+        "systems": "systems_3",
+        "treefmt-nix": "treefmt-nix"
       },
       "locked": {
-        "lastModified": 1654921554,
+        "lastModified": 1708589824,
-        "narHash": "sha256-hkfMdQAHSwLWlg0sBVvgrQdIiBP45U1/ktmFpY4g2Mo=",
+        "narHash": "sha256-2GOiFTkvs5MtVF65sC78KNVxQSmsxtk0WmV1wJ9V2ck=",
         "owner": "nix-community",
         "repo": "poetry2nix",
-        "rev": "7b71679fa7df00e1678fc3f1d1d4f5f372341b63",
+        "rev": "3c92540611f42d3fb2d0d084a6c694cd6544b609",
         "type": "github"
       },
       "original": {
         "owner": "nix-community",
         "repo": "poetry2nix",
-        "rev": "7b71679fa7df00e1678fc3f1d1d4f5f372341b63",
         "type": "github"
       }
     },
@@ -86,7 +100,72 @@
       "inputs": {
         "flake-utils": "flake-utils",
         "nixpkgs": "nixpkgs",
-        "poetry2nix": "poetry2nix"
+        "poetry2nixSrc": "poetry2nixSrc"
+      }
+    },
+    "systems": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
+    },
+    "systems_2": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
+    },
+    "systems_3": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "id": "systems",
+        "type": "indirect"
+      }
+    },
+    "treefmt-nix": {
+      "inputs": {
+        "nixpkgs": [
+          "poetry2nixSrc",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1708335038,
+        "narHash": "sha256-ETLZNFBVCabo7lJrpjD6cAbnE11eDOjaQnznmg/6hAE=",
+        "owner": "numtide",
+        "repo": "treefmt-nix",
+        "rev": "e504621290a1fd896631ddbc5e9c16f4366c9f65",
+        "type": "github"
+      },
+      "original": {
+        "owner": "numtide",
+        "repo": "treefmt-nix",
+        "type": "github"
       }
     }
   },

flake.nix

@@ -1,63 +1,46 @@
 {
   description = "Application packaged using poetry2nix";
 
-  inputs.flake-utils.url = "github:numtide/flake-utils?rev=0f8662f1319ad6abf89b3380dd2722369fc51ade";
+  inputs.flake-utils.url = "github:numtide/flake-utils";
-  inputs.nixpkgs.url = "github:NixOS/nixpkgs?rev=37b6b161e536fddca54424cf80662bce735bdd1e";
+  inputs.nixpkgs.url = "github:NixOS/nixpkgs";
-  inputs.poetry2nix.url = "github:nix-community/poetry2nix?rev=7b71679fa7df00e1678fc3f1d1d4f5f372341b63";
+  inputs.poetry2nixSrc = {
+    url = "github:nix-community/poetry2nix";
+    inputs.nixpkgs.follows = "nixpkgs";
+  };
 
-  outputs = { self, nixpkgs, flake-utils, poetry2nix }:
+  outputs = { self, nixpkgs, flake-utils, poetry2nixSrc }:
-    {
+    flake-utils.lib.eachDefaultSystem (system:
-      # Nixpkgs overlay providing the application
-      overlay = nixpkgs.lib.composeManyExtensions [
-        poetry2nix.overlay
-        (final: prev: {
-          # The application
-          deepdog = prev.poetry2nix.mkPoetryApplication {
-            overrides = final.poetry2nix.overrides.withDefaults (self: super: {
-              # …
-              # workaround https://github.com/nix-community/poetry2nix/issues/568
-              pdme = super.pdme.overridePythonAttrs (old: {
-                buildInputs = old.buildInputs or [ ] ++ [ final.python39.pkgs.poetry-core ];
-              });
-            });
-            projectDir = ./.;
-          };
-          deepdogEnv = prev.poetry2nix.mkPoetryEnv {
-            overrides = final.poetry2nix.overrides.withDefaults (self: super: {
-              # …
-              # workaround https://github.com/nix-community/poetry2nix/issues/568
-              pdme = super.pdme.overridePythonAttrs (old: {
-                buildInputs = old.buildInputs or [ ] ++ [ final.python39.pkgs.poetry-core ];
-              });
-            });
-            projectDir = ./.;
-          };
-        })
-      ];
-    } // (flake-utils.lib.eachDefaultSystem (system:
       let
-        pkgs = import nixpkgs {
+        pkgs = nixpkgs.legacyPackages.${system};
-          inherit system;
+	poetry2nix = poetry2nixSrc.lib.mkPoetry2Nix { inherit pkgs; };
-          overlays = [ self.overlay ];
+      in {
-        };
+        packages = {
-      in
+	  deepdogApp = poetry2nix.mkPoetryApplication {
-      {
+            projectDir = self;
-        apps = {
+	    python = pkgs.python39;
-          deepdog = pkgs.deepdog;
+	    preferWheels = true;
-        };
+	  };
-
+	  deepdogEnv = poetry2nix.mkPoetryEnv {
-        defaultApp = pkgs.deepdog;
+	    projectDir = self;
-        devShell = pkgs.mkShell {
+	    python = pkgs.python39;
-          buildInputs = [
+	    preferWheels = true;
-            pkgs.poetry
+	    overrides = poetry2nix.overrides.withDefaults (self: super: {
-            pkgs.deepdogEnv
+	    });
-            pkgs.deepdog
+	  };
-          ];
+	  default = self.packages.${system}.deepdogEnv;
-          shellHook = ''
+	};
-            export DO_NIX_CUSTOM=1
+	devShells.default = pkgs.mkShell {
-          '';
+	  inputsFrom = [ self.packages.${system}.deepdogEnv ];
-          packages = [ pkgs.nodejs-16_x ];
+	  buildInputs = [
-        };
+	    pkgs.poetry
-
+	    self.packages.${system}.deepdogEnv
-      }));
+	    self.packages.${system}.deepdogApp
+	    pkgs.just
+	  ];
+	  shellHook = ''
+	    export DO_NIX_CUSTOM=1
+	  '';
+	};
+      }
+    );
 }

justfile

@@ -0,0 +1,53 @@
+
+# execute default build
+default: build
+
+# builds the python module using poetry
+build:
+	echo "building..."
+	poetry build
+
+# print a message displaying whether nix is being used
+checknix:
+	#!/usr/bin/env bash
+	set -euxo pipefail
+	if [[ "${DO_NIX_CUSTOM:=0}" -eq 1 ]]; then
+		echo "In an interactive nix env."
+	else
+		echo "Using poetry as runner, no nix detected."
+	fi
+
+# run all tests
+test: fmt
+	#!/usr/bin/env bash
+	set -euxo pipefail
+	
+	if [[ "${DO_NIX_CUSTOM:=0}" -eq 1 ]]; then
+		echo "testing, using nix..."
+		flake8 deepdog tests
+		mypy deepdog
+		pytest
+	else
+		echo "testing..."
+		poetry run flake8 deepdog tests
+		poetry run mypy deepdog
+		poetry run pytest
+	fi
+
+# format code
+fmt:
+	#!/usr/bin/env bash
+	set -euxo pipefail
+	if [[ "${DO_NIX_CUSTOM:=0}" -eq 1 ]]; then
+	      black .
+	else
+		poetry run black .
+	fi
+	find . -type f -name "*.py" -exec sed -i -e 's/    /\t/g' {} \;
+
+# release the app, checking that our working tree is clean and ready for release
+release:
+	./scripts/release.sh
+
+htmlcov:
+	poetry run pytest --cov-report=html