diff --git a/.gitignore b/.gitignore index c803f26..1507495 100644 --- a/.gitignore +++ b/.gitignore @@ -70,7 +70,7 @@ instance/ .scrapy # Sphinx documentation -docs/_build/ +docs/build/ # PyBuilder .pybuilder/ diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000..d0c3cbf --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = source +BUILDDIR = build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/make.bat b/docs/make.bat new file mode 100644 index 0000000..9534b01 --- /dev/null +++ b/docs/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=source +set BUILDDIR=build + +if "%1" == "" goto help + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.http://sphinx-doc.org/ + exit /b 1 +) + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/docs/source/conf.py b/docs/source/conf.py new file mode 100644 index 0000000..a317b91 --- /dev/null +++ b/docs/source/conf.py @@ -0,0 +1,55 @@ +# Configuration file for the Sphinx documentation builder. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Path setup -------------------------------------------------------------- + +# If extensions (or modules to document with autodoc) are in another directory, +# add these directories to sys.path here. If the directory is relative to the +# documentation root, use os.path.abspath to make it absolute, like shown here. +# +import os +import sys +sys.path.insert(0, os.path.abspath('.')) + + +# -- Project information ----------------------------------------------------- + +project = 'pathfinder' +copyright = '2021, Deepak Mallubhotla' +author = 'Deepak Mallubhotla' + + +# -- General configuration --------------------------------------------------- + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [ + 'sphinx.ext.autodoc', + 'sphinx.ext.coverage', + 'sphinx.ext.napoleon' +] + +# Add any paths that contain templates here, relative to this directory. +templates_path = ['_templates'] + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = [] + + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = 'alabaster' + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". +html_static_path = ['_static'] diff --git a/docs/source/index.rst b/docs/source/index.rst new file mode 100644 index 0000000..5f9e068 --- /dev/null +++ b/docs/source/index.rst @@ -0,0 +1,15 @@ +Welcome to pathfinder's documentation! +====================================== + +.. toctree:: + :maxdepth: 2 + :caption: Contents: + + modules + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/docs/source/modules.rst b/docs/source/modules.rst new file mode 100644 index 0000000..03ebd37 --- /dev/null +++ b/docs/source/modules.rst @@ -0,0 +1,7 @@ +pathfinder +========== + +.. toctree:: + :maxdepth: 4 + + pathfinder diff --git a/docs/source/pathfinder.model.rst b/docs/source/pathfinder.model.rst new file mode 100644 index 0000000..d1f64b7 --- /dev/null +++ b/docs/source/pathfinder.model.rst @@ -0,0 +1,37 @@ +pathfinder.model package +======================== + +Submodules +---------- + +pathfinder.model.dot module +--------------------------- + +.. automodule:: pathfinder.model.dot + :members: + :undoc-members: + :show-inheritance: + +pathfinder.model.model module +----------------------------- + +.. automodule:: pathfinder.model.model + :members: + :undoc-members: + :show-inheritance: + +pathfinder.model.staticdipole module +------------------------------------ + +.. automodule:: pathfinder.model.staticdipole + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: pathfinder.model + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/source/pathfinder.rst b/docs/source/pathfinder.rst new file mode 100644 index 0000000..8a94534 --- /dev/null +++ b/docs/source/pathfinder.rst @@ -0,0 +1,29 @@ +pathfinder package +================== + +Subpackages +----------- + +.. toctree:: + :maxdepth: 4 + + pathfinder.model + +Submodules +---------- + +pathfinder.meta module +---------------------- + +.. automodule:: pathfinder.meta + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: pathfinder + :members: + :undoc-members: + :show-inheritance: diff --git a/pathfinder/model/dot.py b/pathfinder/model/dot.py index a59b23d..e5ce203 100644 --- a/pathfinder/model/dot.py +++ b/pathfinder/model/dot.py @@ -33,7 +33,8 @@ class DotMeasurement(): Returns ---------- - Returns the voltage from that dipole at the point. + float + The voltage from that dipole at the point. ''' p = pt[0:3] # hardcoded here because chances s = pt[3:6] # are we'll only ever work in 3d. diff --git a/poetry.lock b/poetry.lock index 953ea36..aa8a171 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,11 @@ +[[package]] +name = "alabaster" +version = "0.7.12" +description = "A configurable sidebar-enabled Sphinx theme" +category = "dev" +optional = false +python-versions = "*" + [[package]] name = "atomicwrites" version = "1.4.0" @@ -20,6 +28,36 @@ docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +[[package]] +name = "babel" +version = "2.9.1" +description = "Internationalization utilities" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +pytz = ">=2015.7" + +[[package]] +name = "certifi" +version = "2021.5.30" +description = "Python package for providing Mozilla's CA Bundle." +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "charset-normalizer" +version = "2.0.4" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." +category = "dev" +optional = false +python-versions = ">=3.5.0" + +[package.extras] +unicode_backport = ["unicodedata2"] + [[package]] name = "colorama" version = "0.4.4" @@ -39,6 +77,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] toml = ["toml"] +[[package]] +name = "docutils" +version = "0.17.1" +description = "Docutils -- Python Documentation Utilities" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + [[package]] name = "flake8" version = "3.9.2" @@ -52,6 +98,22 @@ mccabe = ">=0.6.0,<0.7.0" pycodestyle = ">=2.7.0,<2.8.0" pyflakes = ">=2.3.0,<2.4.0" +[[package]] +name = "idna" +version = "3.2" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "dev" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "imagesize" +version = "1.2.0" +description = "Getting image size from png/jpeg/jpeg2000/gif file" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "iniconfig" version = "1.1.1" @@ -60,6 +122,28 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "jinja2" +version = "3.0.1" +description = "A very fast and expressive template engine." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +MarkupSafe = ">=2.0" + +[package.extras] +i18n = ["Babel (>=2.7)"] + +[[package]] +name = "markupsafe" +version = "2.0.1" +description = "Safely add untrusted strings to HTML/XML markup." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "mccabe" version = "0.6.1" @@ -154,6 +238,14 @@ category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +[[package]] +name = "pygments" +version = "2.10.0" +description = "Pygments is a syntax highlighting package written in Python." +category = "dev" +optional = false +python-versions = ">=3.5" + [[package]] name = "pyparsing" version = "2.4.7" @@ -199,6 +291,32 @@ toml = "*" [package.extras] testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] +[[package]] +name = "pytz" +version = "2021.1" +description = "World timezone definitions, modern and historical" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "requests" +version = "2.26.0" +description = "Python HTTP for Humans." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" + +[package.dependencies] +certifi = ">=2017.4.17" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} +urllib3 = ">=1.21.1,<1.27" + +[package.extras] +socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] + [[package]] name = "scipy" version = "1.5.4" @@ -210,6 +328,116 @@ python-versions = ">=3.6" [package.dependencies] numpy = ">=1.14.5" +[[package]] +name = "snowballstemmer" +version = "2.1.0" +description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "sphinx" +version = "4.1.2" +description = "Python documentation generator" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +alabaster = ">=0.7,<0.8" +babel = ">=1.3" +colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} +docutils = ">=0.14,<0.18" +imagesize = "*" +Jinja2 = ">=2.3" +packaging = "*" +Pygments = ">=2.0" +requests = ">=2.5.0" +snowballstemmer = ">=1.1" +sphinxcontrib-applehelp = "*" +sphinxcontrib-devhelp = "*" +sphinxcontrib-htmlhelp = ">=2.0.0" +sphinxcontrib-jsmath = "*" +sphinxcontrib-qthelp = "*" +sphinxcontrib-serializinghtml = 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sphinx extension which renders HTML help files" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest", "html5lib"] + +[[package]] +name = "sphinxcontrib-jsmath" +version = "1.0.1" +description = "A sphinx extension which renders display math in HTML via JavaScript" +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +test = ["pytest", "flake8", "mypy"] + +[[package]] +name = "sphinxcontrib-qthelp" +version = "1.0.3" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +name = "sphinxcontrib-serializinghtml" +version = "1.1.5" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." +category = "dev" 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