feat: adds ability to use phase measurements only for correlations
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@ -66,6 +66,42 @@ def get_a_result_fast_filter_pairs(input) -> int:
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return len(current_sample)
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def get_a_result_fast_filter_pair_phase_only(input) -> int:
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(
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model,
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pair_inputs,
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pair_phase_lows,
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pair_phase_highs,
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monte_carlo_count,
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seed,
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) = input
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rng = numpy.random.default_rng(seed)
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# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
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sample_dipoles = model.get_monte_carlo_dipole_inputs(
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monte_carlo_count, None, rng_to_use=rng
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)
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current_sample = sample_dipoles
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for pi, plow, phigh in zip(pair_inputs, pair_phase_lows, pair_phase_highs):
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if len(current_sample) < 1:
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break
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vals = pdme.util.fast_nonlocal_spectrum.signarg(
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pdme.util.fast_nonlocal_spectrum.fast_s_nonlocal_dipoleses(
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numpy.array([pi]), current_sample
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)
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)
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current_sample = current_sample[
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numpy.all(
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((vals > plow) & (vals < phigh)) | ((vals < plow) & (vals > phigh)),
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axis=1,
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)
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]
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return len(current_sample)
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def get_a_result_fast_filter(input) -> int:
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model, dot_inputs, lows, highs, monte_carlo_count, seed = input
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@ -108,6 +144,11 @@ class RealSpectrumRun:
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run_count: int
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The number of runs to do.
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If pair_measurements is not None, uses pair measurement method (and single measurements too).
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If pair_phase_measurements is not None, ignores measurements and uses phase measurements _only_
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This is lazy design on my part.
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"""
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def __init__(
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@ -125,6 +166,9 @@ class RealSpectrumRun:
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pair_measurements: Optional[
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Sequence[pdme.measurement.DotPairRangeMeasurement]
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] = None,
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pair_phase_measurements: Optional[
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Sequence[pdme.measurement.DotPairRangeMeasurement]
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] = None,
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) -> None:
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self.measurements = measurements
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self.dot_inputs = [(measure.r, measure.f) for measure in self.measurements]
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@ -136,6 +180,8 @@ class RealSpectrumRun:
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if pair_measurements is not None:
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self.pair_measurements = pair_measurements
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self.use_pair_measurements = True
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self.use_pair_phase_measurements = False
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self.dot_pair_inputs = [
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(measure.r1, measure.r2, measure.f)
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for measure in self.pair_measurements
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@ -145,8 +191,14 @@ class RealSpectrumRun:
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self.dot_pair_inputs
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)
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)
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elif pair_phase_measurements is not None:
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self.use_pair_measurements = False
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self.use_pair_phase_measurements = True
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self.pair_phase_measurements = pair_phase_measurements
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else:
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self.use_pair_measurements = False
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self.use_pair_phase_measurements = False
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self.models = [model for (_, model) in models_with_names]
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self.model_names = [name for (name, _) in models_with_names]
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@ -198,6 +250,16 @@ class RealSpectrumRun:
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self.pair_measurements
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)
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pair_phase_lows = None
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pair_phase_highs = None
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if self.use_pair_phase_measurements:
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(
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pair_phase_lows,
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pair_phase_highs,
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) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
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self.pair_phase_measurements
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)
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# define a new seed sequence for each run
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seed_sequence = numpy.random.SeedSequence(self.initial_seed)
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@ -249,6 +311,24 @@ class RealSpectrumRun:
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self.chunksize,
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)
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)
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elif self.use_pair_phase_measurements:
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current_success = sum(
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pool.imap_unordered(
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get_a_result_fast_filter_pairs,
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[
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(
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model,
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self.dot_pair_inputs_array,
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pair_phase_lows,
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pair_phase_highs,
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self.monte_carlo_count,
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seed,
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)
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for seed in seeds
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],
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self.chunksize,
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)
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)
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else:
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current_success = sum(
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242
poetry.lock
generated
242
poetry.lock
generated
@ -20,24 +20,9 @@ d = ["aiohttp (>=3.7.4)"]
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jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
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uvloop = ["uvloop (>=0.15.2)"]
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||||
[[package]]
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name = "bleach"
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version = "6.0.0"
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description = "An easy safelist-based HTML-sanitizing tool."
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category = "dev"
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optional = false
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python-versions = ">=3.7"
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[package.dependencies]
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six = ">=1.9.0"
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webencodings = "*"
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[package.extras]
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css = ["tinycss2 (>=1.1.0,<1.2)"]
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[[package]]
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name = "certifi"
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version = "2022.12.7"
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version = "2024.2.2"
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description = "Python package for providing Mozilla's CA Bundle."
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category = "dev"
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optional = false
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@ -45,18 +30,18 @@ python-versions = ">=3.6"
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[[package]]
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name = "cffi"
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version = "1.15.1"
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||||
version = "1.16.0"
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||||
description = "Foreign Function Interface for Python calling C code."
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category = "dev"
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optional = false
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python-versions = "*"
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python-versions = ">=3.8"
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[package.dependencies]
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pycparser = "*"
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[[package]]
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name = "charset-normalizer"
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version = "3.1.0"
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version = "3.3.2"
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description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
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category = "dev"
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optional = false
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@ -64,7 +49,7 @@ python-versions = ">=3.7.0"
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[[package]]
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name = "click"
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version = "8.1.3"
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version = "8.1.7"
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description = "Composable command line interface toolkit"
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category = "dev"
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optional = false
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@ -92,21 +77,13 @@ category = "dev"
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optional = false
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python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
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[[package]]
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name = "colored"
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version = "1.4.4"
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description = "Simple library for color and formatting to terminal"
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category = "dev"
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optional = false
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python-versions = "*"
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[[package]]
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name = "coverage"
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||||
version = "7.2.7"
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||||
version = "7.4.3"
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||||
description = "Code coverage measurement for Python"
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category = "dev"
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optional = false
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python-versions = ">=3.7"
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python-versions = ">=3.8"
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[package.dependencies]
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tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
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@ -116,28 +93,28 @@ toml = ["tomli"]
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[[package]]
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name = "cryptography"
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version = "40.0.1"
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version = "42.0.5"
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description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
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category = "dev"
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optional = false
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python-versions = ">=3.6"
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python-versions = ">=3.7"
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[package.dependencies]
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cffi = ">=1.12"
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cffi = {version = ">=1.12", markers = "platform_python_implementation != \"PyPy\""}
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[package.extras]
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docs = ["sphinx (>=5.3.0)", "sphinx-rtd-theme (>=1.1.1)"]
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docstest = ["pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
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||||
pep8test = ["black", "ruff", "mypy", "check-manifest"]
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sdist = ["setuptools-rust (>=0.11.4)"]
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docstest = ["pyenchant (>=1.6.11)", "readme-renderer", "sphinxcontrib-spelling (>=4.0.1)"]
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nox = ["nox"]
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pep8test = ["ruff", "mypy", "check-sdist", "click"]
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sdist = ["build"]
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ssh = ["bcrypt (>=3.1.5)"]
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test = ["pytest (>=6.2.0)", "pytest-shard (>=0.1.2)", "pytest-benchmark", "pytest-cov", "pytest-subtests", "pytest-xdist", "pretend", "iso8601"]
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test = ["pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-xdist", "pretend", "certifi"]
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test-randomorder = ["pytest-randomly"]
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tox = ["tox"]
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[[package]]
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name = "docutils"
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version = "0.19"
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version = "0.20.1"
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description = "Docutils -- Python Documentation Utilities"
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category = "dev"
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optional = false
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@ -153,7 +130,7 @@ python-versions = ">=3.5,<4.0"
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[[package]]
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name = "exceptiongroup"
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version = "1.1.1"
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version = "1.2.0"
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||||
description = "Backport of PEP 654 (exception groups)"
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category = "dev"
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optional = false
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@ -177,7 +154,7 @@ pyflakes = ">=2.4.0,<2.5.0"
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[[package]]
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name = "gitdb"
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||||
version = "4.0.10"
|
||||
version = "4.0.11"
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||||
description = "Git Object Database"
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||||
category = "dev"
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optional = false
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@ -188,7 +165,7 @@ smmap = ">=3.0.1,<6"
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[[package]]
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name = "gitpython"
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version = "3.1.31"
|
||||
version = "3.1.42"
|
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description = "GitPython is a Python library used to interact with Git repositories"
|
||||
category = "dev"
|
||||
optional = false
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@ -197,9 +174,12 @@ python-versions = ">=3.7"
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[package.dependencies]
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gitdb = ">=4.0.1,<5"
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|
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[package.extras]
|
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test = ["black", "coverage", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar", "mock"]
|
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|
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[[package]]
|
||||
name = "idna"
|
||||
version = "3.4"
|
||||
version = "3.6"
|
||||
description = "Internationalized Domain Names in Applications (IDNA)"
|
||||
category = "dev"
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optional = false
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@ -207,34 +187,34 @@ python-versions = ">=3.5"
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[[package]]
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||||
name = "importlib-metadata"
|
||||
version = "6.2.1"
|
||||
version = "7.0.1"
|
||||
description = "Read metadata from Python packages"
|
||||
category = "dev"
|
||||
optional = false
|
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python-versions = ">=3.7"
|
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python-versions = ">=3.8"
|
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|
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[package.dependencies]
|
||||
zipp = ">=0.5"
|
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|
||||
[package.extras]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
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docs = ["sphinx (>=3.5)", "sphinx (<7.2.5)", "jaraco.packaging (>=9.3)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
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perf = ["ipython"]
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testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8", "importlib-resources (>=1.3)"]
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testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ruff", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
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[[package]]
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name = "importlib-resources"
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version = "5.12.0"
|
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version = "6.1.2"
|
||||
description = "Read resources from Python packages"
|
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category = "dev"
|
||||
optional = false
|
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python-versions = ">=3.7"
|
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python-versions = ">=3.8"
|
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|
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[package.dependencies]
|
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zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
|
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|
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[package.extras]
|
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docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
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testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
|
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docs = ["sphinx (>=3.5)", "sphinx (<7.2.5)", "jaraco.packaging (>=9.3)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
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testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)", "pytest-mypy"]
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[[package]]
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name = "iniconfig"
|
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@ -246,26 +226,26 @@ python-versions = ">=3.7"
|
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|
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[[package]]
|
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name = "invoke"
|
||||
version = "1.7.3"
|
||||
version = "2.2.0"
|
||||
description = "Pythonic task execution"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[[package]]
|
||||
name = "jaraco.classes"
|
||||
version = "3.2.3"
|
||||
version = "3.3.1"
|
||||
description = "Utility functions for Python class constructs"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
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python-versions = ">=3.8"
|
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|
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[package.dependencies]
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more-itertools = "*"
|
||||
|
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[package.extras]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
|
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docs = ["sphinx (>=3.5)", "sphinx (<7.2.5)", "jaraco.packaging (>=9.3)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
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testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ruff (>=0.2.1)", "pytest-mypy"]
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[[package]]
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||||
name = "jeepney"
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||||
@ -281,11 +261,11 @@ trio = ["trio", "async-generator"]
|
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|
||||
[[package]]
|
||||
name = "keyring"
|
||||
version = "23.13.1"
|
||||
version = "24.3.1"
|
||||
description = "Store and access your passwords safely."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.dependencies]
|
||||
importlib-metadata = {version = ">=4.11.4", markers = "python_version < \"3.12\""}
|
||||
@ -296,9 +276,9 @@ pywin32-ctypes = {version = ">=0.2.0", markers = "sys_platform == \"win32\""}
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SecretStorage = {version = ">=3.2", markers = "sys_platform == \"linux\""}
|
||||
|
||||
[package.extras]
|
||||
completion = ["shtab"]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
|
||||
completion = ["shtab (>=1.1.0)"]
|
||||
docs = ["sphinx (>=3.5)", "sphinx (<7.2.5)", "jaraco.packaging (>=9.3)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ruff (>=0.2.1)", "pytest-mypy"]
|
||||
|
||||
[[package]]
|
||||
name = "mccabe"
|
||||
@ -310,11 +290,11 @@ python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "more-itertools"
|
||||
version = "9.1.0"
|
||||
version = "10.2.0"
|
||||
description = "More routines for operating on iterables, beyond itertools"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[[package]]
|
||||
name = "mypy"
|
||||
@ -342,6 +322,14 @@ category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.5"
|
||||
|
||||
[[package]]
|
||||
name = "nh3"
|
||||
version = "0.2.15"
|
||||
description = "Python bindings to the ammonia HTML sanitization library."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
|
||||
[[package]]
|
||||
name = "numpy"
|
||||
version = "1.22.3"
|
||||
@ -352,7 +340,7 @@ python-versions = ">=3.8"
|
||||
|
||||
[[package]]
|
||||
name = "packaging"
|
||||
version = "23.0"
|
||||
version = "23.2"
|
||||
description = "Core utilities for Python packages"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -360,15 +348,15 @@ python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "pathspec"
|
||||
version = "0.11.1"
|
||||
version = "0.12.1"
|
||||
description = "Utility library for gitignore style pattern matching of file paths."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[[package]]
|
||||
name = "pdme"
|
||||
version = "0.9.1"
|
||||
version = "0.9.3"
|
||||
description = "Python dipole model evaluator"
|
||||
category = "main"
|
||||
optional = false
|
||||
@ -391,23 +379,23 @@ testing = ["pytest", "pytest-cov"]
|
||||
|
||||
[[package]]
|
||||
name = "platformdirs"
|
||||
version = "3.2.0"
|
||||
version = "4.2.0"
|
||||
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.extras]
|
||||
docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)", "sphinx (>=6.1.3)"]
|
||||
test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest (>=7.2.2)"]
|
||||
docs = ["furo (>=2023.9.10)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.25.2)", "sphinx (>=7.2.6)"]
|
||||
test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest (>=7.4.3)"]
|
||||
|
||||
[[package]]
|
||||
name = "pluggy"
|
||||
version = "1.0.0"
|
||||
version = "1.4.0"
|
||||
description = "plugin and hook calling mechanisms for python"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.extras]
|
||||
dev = ["pre-commit", "tox"]
|
||||
@ -439,33 +427,34 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
|
||||
|
||||
[[package]]
|
||||
name = "pygments"
|
||||
version = "2.14.0"
|
||||
version = "2.17.2"
|
||||
description = "Pygments is a syntax highlighting package written in Python."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.extras]
|
||||
plugins = ["importlib-metadata"]
|
||||
windows-terminal = ["colorama (>=0.4.6)"]
|
||||
|
||||
[[package]]
|
||||
name = "pytest"
|
||||
version = "7.3.0"
|
||||
version = "8.0.2"
|
||||
description = "pytest: simple powerful testing with Python"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.dependencies]
|
||||
colorama = {version = "*", markers = "sys_platform == \"win32\""}
|
||||
exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
|
||||
iniconfig = "*"
|
||||
packaging = "*"
|
||||
pluggy = ">=0.12,<2.0"
|
||||
pluggy = ">=1.3.0,<2.0"
|
||||
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
|
||||
|
||||
[package.extras]
|
||||
testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
|
||||
testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
|
||||
|
||||
[[package]]
|
||||
name = "pytest-cov"
|
||||
@ -484,7 +473,7 @@ testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtuale
|
||||
|
||||
[[package]]
|
||||
name = "python-gitlab"
|
||||
version = "3.13.0"
|
||||
version = "3.15.0"
|
||||
description = "Interact with GitLab API"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -500,7 +489,7 @@ yaml = ["PyYaml (>=5.2)"]
|
||||
|
||||
[[package]]
|
||||
name = "python-semantic-release"
|
||||
version = "7.33.2"
|
||||
version = "7.34.6"
|
||||
description = "Automatic Semantic Versioning for Python projects"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -511,7 +500,7 @@ click = ">=7,<9"
|
||||
click-log = ">=0.3,<1"
|
||||
dotty-dict = ">=1.3.0,<2"
|
||||
gitpython = ">=3.0.8,<4"
|
||||
invoke = ">=1.4.1,<2"
|
||||
invoke = ">=1.4.1,<3"
|
||||
packaging = "*"
|
||||
python-gitlab = ">=2,<4"
|
||||
requests = ">=2.25,<3"
|
||||
@ -521,29 +510,29 @@ twine = ">=3,<4"
|
||||
|
||||
[package.extras]
|
||||
dev = ["tox", "isort", "black"]
|
||||
docs = ["Sphinx (==1.3.6)", "Jinja2 (==3.0.3)"]
|
||||
docs = ["Sphinx (==1.8.6)", "Jinja2 (==3.0.3)"]
|
||||
mypy = ["mypy", "types-requests"]
|
||||
test = ["coverage (>=5,<6)", "pytest (>=7,<8)", "pytest-xdist (>=1,<2)", "pytest-mock (>=2,<3)", "responses (==0.13.3)", "mock (==1.3.0)"]
|
||||
|
||||
[[package]]
|
||||
name = "pywin32-ctypes"
|
||||
version = "0.2.0"
|
||||
description = ""
|
||||
version = "0.2.2"
|
||||
description = "A (partial) reimplementation of pywin32 using ctypes/cffi"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
python-versions = ">=3.6"
|
||||
|
||||
[[package]]
|
||||
name = "readme-renderer"
|
||||
version = "37.3"
|
||||
description = "readme_renderer is a library for rendering \"readme\" descriptions for Warehouse"
|
||||
version = "43.0"
|
||||
description = "readme_renderer is a library for rendering readme descriptions for Warehouse"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.dependencies]
|
||||
bleach = ">=2.1.0"
|
||||
docutils = ">=0.13.1"
|
||||
nh3 = ">=0.2.14"
|
||||
Pygments = ">=2.5.1"
|
||||
|
||||
[package.extras]
|
||||
@ -551,17 +540,17 @@ md = ["cmarkgfm (>=0.8.0)"]
|
||||
|
||||
[[package]]
|
||||
name = "requests"
|
||||
version = "2.28.2"
|
||||
version = "2.31.0"
|
||||
description = "Python HTTP for Humans."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7, <4"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[package.dependencies]
|
||||
certifi = ">=2017.4.17"
|
||||
charset-normalizer = ">=2,<4"
|
||||
idna = ">=2.5,<4"
|
||||
urllib3 = ">=1.21.1,<1.27"
|
||||
urllib3 = ">=1.21.1,<3"
|
||||
|
||||
[package.extras]
|
||||
socks = ["PySocks (>=1.5.6,!=1.5.7)"]
|
||||
@ -569,7 +558,7 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
|
||||
|
||||
[[package]]
|
||||
name = "requests-toolbelt"
|
||||
version = "0.10.1"
|
||||
version = "1.0.0"
|
||||
description = "A utility belt for advanced users of python-requests"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -625,33 +614,24 @@ category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
|
||||
|
||||
[[package]]
|
||||
name = "six"
|
||||
version = "1.16.0"
|
||||
description = "Python 2 and 3 compatibility utilities"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
|
||||
|
||||
[[package]]
|
||||
name = "smmap"
|
||||
version = "5.0.0"
|
||||
version = "5.0.1"
|
||||
description = "A pure Python implementation of a sliding window memory map manager"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
|
||||
python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "syrupy"
|
||||
version = "4.0.8"
|
||||
version = "4.6.1"
|
||||
description = "Pytest Snapshot Test Utility"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.8.1,<4"
|
||||
|
||||
[package.dependencies]
|
||||
colored = ">=1.3.92,<2.0.0"
|
||||
pytest = ">=7.0.0,<8.0.0"
|
||||
pytest = ">=7.0.0,<9.0.0"
|
||||
|
||||
[[package]]
|
||||
name = "tomli"
|
||||
@ -663,7 +643,7 @@ python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "tomlkit"
|
||||
version = "0.11.7"
|
||||
version = "0.12.4"
|
||||
description = "Style preserving TOML library"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -671,7 +651,7 @@ python-versions = ">=3.7"
|
||||
|
||||
[[package]]
|
||||
name = "tqdm"
|
||||
version = "4.65.0"
|
||||
version = "4.66.2"
|
||||
description = "Fast, Extensible Progress Meter"
|
||||
category = "dev"
|
||||
optional = false
|
||||
@ -681,7 +661,7 @@ python-versions = ">=3.7"
|
||||
colorama = {version = "*", markers = "platform_system == \"Windows\""}
|
||||
|
||||
[package.extras]
|
||||
dev = ["py-make (>=0.1.0)", "twine", "wheel"]
|
||||
dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
|
||||
notebook = ["ipywidgets (>=6)"]
|
||||
slack = ["slack-sdk"]
|
||||
telegram = ["requests"]
|
||||
@ -708,60 +688,51 @@ urllib3 = ">=1.26.0"
|
||||
|
||||
[[package]]
|
||||
name = "typing-extensions"
|
||||
version = "4.5.0"
|
||||
description = "Backported and Experimental Type Hints for Python 3.7+"
|
||||
version = "4.10.0"
|
||||
description = "Backported and Experimental Type Hints for Python 3.8+"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[[package]]
|
||||
name = "urllib3"
|
||||
version = "1.26.15"
|
||||
version = "2.2.1"
|
||||
description = "HTTP library with thread-safe connection pooling, file post, and more."
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.extras]
|
||||
brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
|
||||
secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "urllib3-secure-extra", "ipaddress"]
|
||||
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
|
||||
|
||||
[[package]]
|
||||
name = "webencodings"
|
||||
version = "0.5.1"
|
||||
description = "Character encoding aliases for legacy web content"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
|
||||
h2 = ["h2 (>=4,<5)"]
|
||||
socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
|
||||
zstd = ["zstandard (>=0.18.0)"]
|
||||
|
||||
[[package]]
|
||||
name = "zipp"
|
||||
version = "3.15.0"
|
||||
version = "3.17.0"
|
||||
description = "Backport of pathlib-compatible object wrapper for zip files"
|
||||
category = "dev"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = ">=3.8"
|
||||
|
||||
[package.extras]
|
||||
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "jaraco.functools", "more-itertools", "big-o", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
|
||||
docs = ["sphinx (>=3.5)", "sphinx (<7.2.5)", "jaraco.packaging (>=9.3)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
|
||||
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ruff", "jaraco.itertools", "jaraco.functools", "more-itertools", "big-o", "pytest-ignore-flaky", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
|
||||
|
||||
[metadata]
|
||||
lock-version = "1.1"
|
||||
python-versions = ">=3.8.1,<3.10"
|
||||
content-hash = "e1531b1493bac50ffe5e8f9a46a64d9b66198f7021f6d643c72f21cb53dc77ec"
|
||||
content-hash = "b7f33da5b5a2af6bcb2a4c95cf391d04a76047d4f7e5c105b7cc38c73563fa51"
|
||||
|
||||
[metadata.files]
|
||||
black = []
|
||||
bleach = []
|
||||
certifi = []
|
||||
cffi = []
|
||||
charset-normalizer = []
|
||||
click = []
|
||||
click-log = []
|
||||
colorama = []
|
||||
colored = []
|
||||
coverage = []
|
||||
cryptography = []
|
||||
docutils = []
|
||||
@ -782,6 +753,7 @@ mccabe = []
|
||||
more-itertools = []
|
||||
mypy = []
|
||||
mypy-extensions = []
|
||||
nh3 = []
|
||||
numpy = []
|
||||
packaging = []
|
||||
pathspec = []
|
||||
@ -805,7 +777,6 @@ rfc3986 = []
|
||||
scipy = []
|
||||
secretstorage = []
|
||||
semver = []
|
||||
six = []
|
||||
smmap = []
|
||||
syrupy = []
|
||||
tomli = []
|
||||
@ -814,5 +785,4 @@ tqdm = []
|
||||
twine = []
|
||||
typing-extensions = []
|
||||
urllib3 = []
|
||||
webencodings = []
|
||||
zipp = []
|
||||
|
||||
@ -6,7 +6,7 @@ authors = ["Deepak Mallubhotla <dmallubhotla+github@gmail.com>"]
|
||||
|
||||
[tool.poetry.dependencies]
|
||||
python = ">=3.8.1,<3.10"
|
||||
pdme = "^0.9.1"
|
||||
pdme = "^0.9.3"
|
||||
numpy = "1.22.3"
|
||||
scipy = "1.10"
|
||||
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user