378 lines
19 KiB
Markdown
378 lines
19 KiB
Markdown
# Changelog
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All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.
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## [1.7.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.6.0...1.7.0) (2025-02-27)
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### Features
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* adds configurable skip if file exists ([24c6e31](https://gitea.deepak.science:2222/physics/deepdog/commit/24c6e311c1d3067eb98cc60e6ca38d76373bf08e))
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## [1.6.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.5.0...1.6.0) (2025-02-27)
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### Features
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* Adds ability to parse bayesruns without timestamps ([46f6b6c](https://gitea.deepak.science:2222/physics/deepdog/commit/46f6b6cdf15c67aedf0c871d201b8db320bccbdf))
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* allows negative log magnitude strings in models ([c8435b4](https://gitea.deepak.science:2222/physics/deepdog/commit/c8435b4b2a6e4b89030f53b5734eb743e2003fb7))
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## [1.5.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.4.0...1.5.0) (2024-12-30)
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### Features
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* add configurable max number of dipoles to write ([a1b59cd](https://gitea.deepak.science:2222/physics/deepdog/commit/a1b59cd18b30359328a09210d9393f211aab30c2))
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* add configurable max number of dipoles to write ([53f8993](https://gitea.deepak.science:2222/physics/deepdog/commit/53f8993f2b155228fff5cbee84f10c62eb149a1f))
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## [1.4.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.3.0...1.4.0) (2024-09-04)
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### Features
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* add subset sim probs command for bayes for subset simulation results ([c881da2](https://gitea.deepak.science:2222/physics/deepdog/commit/c881da28370a1e51d062e1a7edaa62af6eb98d0a))
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* allows some betetr matching for single_dipole runs ([5425ce1](https://gitea.deepak.science:2222/physics/deepdog/commit/5425ce1362919af4cc4dbd5813df3be8d877b198))
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* indexifier now has len ([d962ecb](https://gitea.deepak.science:2222/physics/deepdog/commit/d962ecb11e929de1d9aa458b5d8e82270eff0039))
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### Bug Fixes
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* update log file arg names in cli scripts ([6a5c593](https://gitea.deepak.science:2222/physics/deepdog/commit/6a5c5931d4fc849d0d6a0f2b971523a0f039d559))
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## [1.3.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.2.1...1.3.0) (2024-05-20)
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### Features
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* add multi run to wrap multi model and repeat runs ([92b49fc](https://gitea.deepak.science:2222/physics/deepdog/commit/92b49fce7c86f14484deb1c4aaaa810a6f69c08a))
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* adds a filter that works with cost functions ([8845b28](https://gitea.deepak.science:2222/physics/deepdog/commit/8845b2875f2c91c91dd3988fabda26400c59b2d7))
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* improve initial cost calculation to allow multiprocessing, adds ability to specify a number of levels to do with direct mc instead of subset simulation ([09fad2e](https://gitea.deepak.science:2222/physics/deepdog/commit/09fad2e1024d9237a6a4f7931f51cb4c84b83bf8))
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### Bug Fixes
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* Adds ugly hack for stdevs for this uniform range to multiply by root3, proper fix would be in pdme ([b1c01b2](https://gitea.deepak.science:2222/physics/deepdog/commit/b1c01b25c8f2c3947be23f5b2c656c37437dab17))
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* fix seeding to avoid recreating seed combinations across multi runs ([24ac65b](https://gitea.deepak.science:2222/physics/deepdog/commit/24ac65bf9c74c454fec826ca9de640fe095f5a17))
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### [1.2.1](https://gitea.deepak.science:2222/physics/deepdog/compare/1.2.0...1.2.1) (2024-05-12)
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## [1.2.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.1.0...1.2.0) (2024-05-09)
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### Features
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* adds additional matching regexes ([dc1d2d4](https://gitea.deepak.science:2222/physics/deepdog/commit/dc1d2d45a3e631c5efccce80f8a24fa87c6089e0))
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* adds magnitude enabled parsing option ([f0e2fa3](https://gitea.deepak.science:2222/physics/deepdog/commit/f0e2fa3da9f5a5136908d691137a904fda4e3a9a))
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## [1.1.0](https://gitea.deepak.science:2222/physics/deepdog/compare/1.0.1...1.1.0) (2024-05-03)
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### Features
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* allows disabling timestamps in directmc bayesrun files ([fb018ab](https://gitea.deepak.science:2222/physics/deepdog/commit/fb018abeae2adf4438a030140a6c905f11bb6bc1))
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* removes legacy bayes run, technically breaking but just don't use them ([5361dad](https://gitea.deepak.science:2222/physics/deepdog/commit/5361dada8be4950b5157862f6a92254b543889c3))
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### [1.0.1](https://gitea.deepak.science:2222/physics/deepdog/compare/1.0.0...1.0.1) (2024-05-02)
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### Bug Fixes
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* fixes issue of zero division error with no successes for anything ([e25db1e](https://gitea.deepak.science:2222/physics/deepdog/commit/e25db1e0f677e8d9a657fa1631305cc8f05ff9ff))
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## [1.0.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.8.1...1.0.0) (2024-05-01)
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### ⚠ BREAKING CHANGES
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* allows new seed spec instead of cli arg, removes old cli arg
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### Features
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* adds additional file slug parsing ([2105754](https://gitea.deepak.science:2222/physics/deepdog/commit/2105754911c89bde9dcbea9866462225604a3524))
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* Adds more powerful direct mc runs to sub for old real spectrum run ([f2b1a1d](https://gitea.deepak.science:2222/physics/deepdog/commit/f2b1a1dd3b3436e37d84f7843b9b2a202be4b51c))
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* allows new seed spec instead of cli arg, removes old cli arg ([7108dd0](https://gitea.deepak.science:2222/physics/deepdog/commit/7108dd0111c7dfd6ec204df1d0058530cd3dcab9))
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### Bug Fixes
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* no longer throws error for overlapping keys, the warning should hopefully be enough? ([f3ba4cb](https://gitea.deepak.science:2222/physics/deepdog/commit/f3ba4cbfd36a9f08cdc4d8774a7f745f8c98bac3))
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### [0.8.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.8.0...0.8.1) (2024-04-28)
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### [0.8.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.8.0...0.8.1) (2024-04-28)
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## [0.8.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.10...0.8.0) (2024-04-28)
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### ⚠ BREAKING CHANGES
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* fixes the spin qubit frequency phase shift calculation which had an index problem
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### Bug Fixes
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* fixes the spin qubit frequency phase shift calculation which had an index problem ([f9646e3](https://gitea.deepak.science:2222/physics/deepdog/commit/f9646e33868e1a0da8ab663230c0c692ac25bb74))
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### [0.7.10](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.9...0.7.10) (2024-04-28)
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### Features
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* adds cli probs ([4b2e573](https://gitea.deepak.science:2222/physics/deepdog/commit/4b2e57371546731137b011461849bb849d4d4e0f))
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* better management of cli wrapper ([b0ad4be](https://gitea.deepak.science:2222/physics/deepdog/commit/b0ad4bead0d4762eb7f848f6e557f6d9b61200b9))
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### [0.7.9](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.8...0.7.9) (2024-04-21)
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### Features
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* adds ability to write custom dmc filters ([ea080ca](https://gitea.deepak.science:2222/physics/deepdog/commit/ea080ca1c7068042ce1e0a222d317f785a6b05f4))
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* adds tarucha phase calculation, using spin qubit precession rate noise ([3ae0783](https://gitea.deepak.science:2222/physics/deepdog/commit/3ae0783d00cbe6a76439c1d671f2cff621d8d0a8))
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### [0.7.8](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.7...0.7.8) (2024-02-29)
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### Bug Fixes
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* uses correct measurements ([5f534a6](https://gitea.deepak.science:2222/physics/deepdog/commit/5f534a60cc7c4838fcacee11a7e58b97d34e154a))
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### [0.7.7](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.6...0.7.7) (2024-02-29)
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### Bug Fixes
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* fixes phase calculation issue with setting input array ([48e41cb](https://gitea.deepak.science:2222/physics/deepdog/commit/48e41cbd2c58d4c4d2747822d618d7d55257643d))
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### [0.7.6](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.5...0.7.6) (2024-02-28)
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### Features
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* adds ability to use phase measurements only for correlations ([bb72e90](https://gitea.deepak.science:2222/physics/deepdog/commit/bb72e903d14704a3783daf2dbc1797b90880aa85))
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### Bug Fixes
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* fixes typeerror vs indexerror on bare float as cost in subset simulation ([65e1948](https://gitea.deepak.science:2222/physics/deepdog/commit/65e19488359d7f5656660da7da8f32ed474989c3))
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### [0.7.5](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.4...0.7.5) (2023-12-09)
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### Features
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* adds direct monte carlo package ([1741807](https://gitea.deepak.science:2222/physics/deepdog/commit/1741807be43d08fb51bc94518dd3b67585c04c20))
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* adds longchain logging if logging last generation ([b4e5f53](https://gitea.deepak.science:2222/physics/deepdog/commit/b4e5f5372682fc64c3734a96c4a899e018f127ce))
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* allows disabling timestamp in subset simulation bayes results ([9a4548d](https://gitea.deepak.science:2222/physics/deepdog/commit/9a4548def45a01f1f518135d4237c3dc09dcc342))
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### [0.7.4](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.3...0.7.4) (2023-07-27)
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### Features
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* adds configurable chunk size for the initial mc level 0 SS stage cost calculation to reduce memory usage ([9a7a3ff](https://gitea.deepak.science:2222/physics/deepdog/commit/9a7a3ff2c7ebe81d5e10647ce39844c372ff7b07))
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* allows for deepdog bayesrun with ss to not print csv to make snapshot testing possible ([8e6ead4](https://gitea.deepak.science:2222/physics/deepdog/commit/8e6ead416c9eba56f568f648d0df44caaa510cfe))
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### Bug Fixes
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* fixes bug if case of clamping necessary ([161bcf4](https://gitea.deepak.science:2222/physics/deepdog/commit/161bcf42addf331661c3929073688b9f2c13502c))
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* fixes bug with clamped probabilities being underestimated ([e6defc7](https://gitea.deepak.science:2222/physics/deepdog/commit/e6defc794871a48ac331023eb477bd235b78d6d0))
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### [0.7.3](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.2...0.7.3) (2023-07-27)
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### Features
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* adds utility options and avoids memory leak ([598dad1](https://gitea.deepak.science:2222/physics/deepdog/commit/598dad1e6dc8fc0b7a5b4a90c8e17bf744e8d98c))
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### [0.7.2](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.1...0.7.2) (2023-07-24)
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### Features
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* clamps results now ([9bb8fc5](https://gitea.deepak.science:2222/physics/deepdog/commit/9bb8fc50fe1bd1a285a333c5a396bfb6ac3176cf))
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### Bug Fixes
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* fixes clamping format etc. ([a170a3c](https://gitea.deepak.science:2222/physics/deepdog/commit/a170a3ce01adcec356e5aaab9abcc0ec4accd64b))
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### [0.7.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.0...0.7.1) (2023-07-24)
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### Features
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* adds subset simulation stuff ([33cab9a](https://gitea.deepak.science:2222/physics/deepdog/commit/33cab9ab4179cec13ae9e591a8ffc32df4dda989))
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## [0.7.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.7...0.7.0) (2023-05-01)
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### ⚠ BREAKING CHANGES
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* removes fastfilter parameter because it should never be needed
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### Features
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* adds pair capability to real spectrum run hopefully ([a089951](https://gitea.deepak.science:2222/physics/deepdog/commit/a089951bbefcd8a0b2efeb49b7a8090412cbb23d))
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* removes fastfilter parameter because it should never be needed ([a015daf](https://gitea.deepak.science:2222/physics/deepdog/commit/a015daf5ff6fa5f6155c8d7e02981b588840a5b0))
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### [0.6.7](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.6...0.6.7) (2023-04-14)
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### Features
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* adds option to cap core count for real spectrum run ([bf15f4a](https://gitea.deepak.science:2222/physics/deepdog/commit/bf15f4a7b7f59504983624e7d512ed7474372032))
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* adds option to cap core count for temp aware run ([12903b2](https://gitea.deepak.science:2222/physics/deepdog/commit/12903b2540cefb040174d230bc0d04719a6dc1b7))
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### Bug Fixes
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* avoids redefinition of core count in loop ([1cf4454](https://gitea.deepak.science:2222/physics/deepdog/commit/1cf44541531541088198bd4599d467df3e1acbcf))
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### [0.6.6](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.5...0.6.6) (2023-04-09)
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### Bug Fixes
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* removes bad logging in multiprocessing function ([8fd1b75](https://gitea.deepak.science:2222/physics/deepdog/commit/8fd1b75e1378301210bfa8f14dd09174bbd21414))
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### [0.6.5](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.4...0.6.5) (2023-04-09)
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### Features
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* adds temp aware guy using new pdme temp-flexible feature for bundling temp models ([de1ec3e](https://gitea.deepak.science:2222/physics/deepdog/commit/de1ec3e70062d418e0d4c89716905cc9313d2e26))
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### [0.6.4](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.3...0.6.4) (2022-08-13)
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### Features
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* Prints model names while running ([7ea1d71](https://gitea.deepak.science:2222/physics/deepdog/commit/7ea1d715f67e81c9fa841c5a62f1cc700ff7363d))
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### [0.6.3](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.2...0.6.3) (2022-06-12)
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### Features
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* adds fast filter variant ([2c5c122](https://gitea.deepak.science:2222/physics/deepdog/commit/2c5c1228209e51d17253f07470e2f1e6dc6872d7))
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* adds tester for fast filter real spectrum ([0a1a277](https://gitea.deepak.science:2222/physics/deepdog/commit/0a1a27759b0d4ab01da214b76ab14bf2b1fe00e3))
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### [0.6.2](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.1...0.6.2) (2022-05-26)
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### Features
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* adds better import api for real data run ([d7e0f13](https://gitea.deepak.science:2222/physics/deepdog/commit/d7e0f13ca55197b24cb534c80f321ee76b9c4a40))
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### [0.6.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.0...0.6.1) (2022-05-22)
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### Features
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* adds new runner for real spectra ([bd56f24](https://gitea.deepak.science:2222/physics/deepdog/commit/bd56f247748babb2ee1f2a1182d25aa968bff5a5))
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## [0.6.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.5.0...0.6.0) (2022-05-22)
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### ⚠ BREAKING CHANGES
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* bayes run now handles multidipoles with changes to output file format etc.
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* logs multiple dipoles better maybe
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* switches over to pdme new stuff, uses models and scraps discretisations entirely
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* removes alt_bayes bayes distinction, which was superfluous when only alt worked
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### Features
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* adds pdme 0.7.0 for multiprocessing ([874d876](https://gitea.deepak.science:2222/physics/deepdog/commit/874d876c9d774433b034d47c4cc0cdac41e6f2c7))
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* bayes run now handles multidipoles with changes to output file format etc. ([5d0a7a4](https://gitea.deepak.science:2222/physics/deepdog/commit/5d0a7a4be09c58f8f8f859384f01d7912a98b8b9))
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* logs multiple dipoles better maybe ([ae8977b](https://gitea.deepak.science:2222/physics/deepdog/commit/ae8977bb1e4d6cd71e88ea0876da8f4318e030b6))
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* removes alt_bayes bayes distinction, which was superfluous when only alt worked ([101569d](https://gitea.deepak.science:2222/physics/deepdog/commit/101569d749e4f3f1842886aa2fd3321b8132278b))
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* switches over to pdme new stuff, uses models and scraps discretisations entirely ([6e29f7a](https://gitea.deepak.science:2222/physics/deepdog/commit/6e29f7a702b578c266a42bba23ac973d155ada10))
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* Uses multidipole for bayes run, with more verbose output ([df89776](https://gitea.deepak.science:2222/physics/deepdog/commit/df8977655de977fd3c4f7383dd9571e551eb1382))
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### Bug Fixes
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* another bug fix for csv generation ([b7da3d6](https://gitea.deepak.science:2222/physics/deepdog/commit/b7da3d61cc5c128cba1d2fcb3770b71b7f6fc4b8))
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* fixes crash when dipole count is smaller than expected max during file write ([b5e0ecb](https://gitea.deepak.science:2222/physics/deepdog/commit/b5e0ecb52886b32d9055302eacfabb69338026b4))
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* fixes format string in csv output for headers ([9afa209](https://gitea.deepak.science:2222/physics/deepdog/commit/9afa209864cdb9255988778e987fe05952848fd4))
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* fixes random issue ([eec926a](https://gitea.deepak.science:2222/physics/deepdog/commit/eec926aaac654f78942b4c6b612e4d1cdcbf81dc))
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* moves logging successes to after they've actually happened ([0caad05](https://gitea.deepak.science:2222/physics/deepdog/commit/0caad05e3cc6a9adba8bf937c3d2f944e1b096a3))
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* now doesn't double randomise frequency ([23b202b](https://gitea.deepak.science:2222/physics/deepdog/commit/23b202beb81cb89f7f20b691e83116fa53764902))
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* whoops deleted word multiprocessing ([31070b5](https://gitea.deepak.science:2222/physics/deepdog/commit/31070b5342c265d930b4c51402f42a3ee2415066))
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## [0.5.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.4.0...0.5.0) (2022-04-30)
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### ⚠ BREAKING CHANGES
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* simulpairs now uses different rng calculator
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### Features
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* adds simulpairs run ([e9277c3](https://gitea.deepak.science:2222/physics/deepdog/commit/e9277c3da777359feb352c0b19f3bb029248ba2f))
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* has better parallelisation ([edf0ba6](https://gitea.deepak.science:2222/physics/deepdog/commit/edf0ba6532c0588fce32341709cdb70e384b83f4))
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* simulpairs now uses different rng calculator ([50dbc48](https://gitea.deepak.science:2222/physics/deepdog/commit/50dbc4835e60bace9e9b4ba37415f073a3c9e479))
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### Bug Fixes
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* better parallelisation hopefully ([42829c0](https://gitea.deepak.science:2222/physics/deepdog/commit/42829c0327e080e18be2fb75e746f6ac0d7c2f6d))
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* Makes altbayessimulpairs available in package ([492a5e6](https://gitea.deepak.science:2222/physics/deepdog/commit/492a5e6681c85f95840e28cfd5d4ce4ca1d54eba))
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* stronger names ([0954429](https://gitea.deepak.science:2222/physics/deepdog/commit/0954429e2d015a105ff16dfbb9e7a352bf53e5e9))
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* Uses correct filename arg for passed in rng ([349341b](https://gitea.deepak.science:2222/physics/deepdog/commit/349341b405375a43b933f1fd7db4ee9fc501def3))
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* uses correct filename for pairs guy ([4c06b39](https://gitea.deepak.science:2222/physics/deepdog/commit/4c06b3912c811c93c310b1d9e4c153f2014c4f8b))
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## [0.4.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.3.5...0.4.0) (2022-04-10)
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### ⚠ BREAKING CHANGES
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* Adds pair calculations, with changing api format
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### Features
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* Adds dynamic cycle count increases to help reach minimum success count ([ec7b4ca](https://gitea.deepak.science:2222/physics/deepdog/commit/ec7b4cac393c15e94c513215c4f1ba32be2ae87a))
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* Adds pair calculations, with changing api format ([6463b13](https://gitea.deepak.science:2222/physics/deepdog/commit/6463b135ef2d212b565864b5ac1b655e014d2194))
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### Bug Fixes
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* uses bigfix from pdme for negatives ([c1c711f](https://gitea.deepak.science:2222/physics/deepdog/commit/c1c711f47b574d3a9b8a24dbcbdd7f50b9be8ea9))
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### [0.3.5](https://gitea.deepak.science:2222/physics/deepdog/compare/0.3.4...0.3.5) (2022-03-07)
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### Features
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* makes chunksize configurable ([88d9613](https://gitea.deepak.science:2222/physics/deepdog/commit/88d961313c1db0d49fd96939aa725a8706fa0412))
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### [0.3.4](https://gitea.deepak.science:2222/physics/deepdog/compare/0.3.3...0.3.4) (2022-03-06)
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### Features
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* Changes chunksize for multiprocessing ([0784cd5](https://gitea.deepak.science:2222/physics/deepdog/commit/0784cd53d79e00684506604f094b5d820b3994d4))
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### [0.3.3](https://gitea.deepak.science:2222/physics/deepdog/compare/0.3.2...0.3.3) (2022-03-06)
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### Bug Fixes
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* Fixes count to use cycles as well ([8617e4d](https://gitea.deepak.science:2222/physics/deepdog/commit/8617e4d2742b112cc824068150682ce3b2cdd879))
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### [0.3.2](https://gitea.deepak.science:2222/physics/deepdog/compare/0.3.1...0.3.2) (2022-03-06)
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### Features
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* Adds monte carlo cycles to trade off space and cpu ([e6d8d33](https://gitea.deepak.science:2222/physics/deepdog/commit/e6d8d33c27e7922581e91c10de4f5faff2a51f8b))
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### [0.3.1](https://gitea.deepak.science:2222/physics/deepdog/compare/v0.3.0...v0.3.1) (2022-03-06)
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### Features
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* Adds alt bayes solver with monte carlo sampler ([7284dbe](https://gitea.deepak.science:2222/physics/deepdog/commit/7284dbeb34ef46189d81fb719252dfa74b8e9fa8))
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* Updates to pdme version for faster bayes resolution ([d078004](https://gitea.deepak.science:2222/physics/deepdog/commit/d078004773d9d9dccd0a9a52ca96aa57690f9b7e))
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