chore(deps): update dependency mypy to ^0.991

chore(release): 0.8.1
2024-04-29 01:30:53 +00:00 · 2024-04-28 04:27:47 -05:00 · 2024-04-28 04:27:32 -05:00 · 2024-04-28 04:27:06 -05:00 · 2024-04-28 04:19:08 -05:00 · 2024-04-28 04:08:02 -05:00
36 changed files with 3941 additions and 1009 deletions
--- a/.flake8
+++ b/.flake8
@@ -1,3 +1,3 @@
 [flake8]
-ignore = W191, E501, W503
+ignore = W191, E501, W503, E203
 max-line-length = 120
--- a/.gitignore
+++ b/.gitignore
@@ -114,6 +114,10 @@ ENV/
 env.bak/
 venv.bak/

+# direnv
+.envrc
+.direnv
+
 # Spyder project settings
 .spyderproject
 .spyproject
@@ -139,3 +143,5 @@ dmypy.json
 cython_debug/

 *.csv
+
+local_scripts/
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,166 @@

 All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.

+### [0.8.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.8.0...0.8.1) (2024-04-28)
+
+### [0.8.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.8.0...0.8.1) (2024-04-28)
+
+## [0.8.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.10...0.8.0) (2024-04-28)
+
+
+### ⚠ BREAKING CHANGES
+
+* fixes the spin qubit frequency phase shift calculation which had an index problem
+
+### Bug Fixes
+
+* fixes the spin qubit frequency phase shift calculation which had an index problem ([f9646e3](https://gitea.deepak.science:2222/physics/deepdog/commit/f9646e33868e1a0da8ab663230c0c692ac25bb74))
+
+### [0.7.10](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.9...0.7.10) (2024-04-28)
+
+
+### Features
+
+* adds cli probs ([4b2e573](https://gitea.deepak.science:2222/physics/deepdog/commit/4b2e57371546731137b011461849bb849d4d4e0f))
+* better management of cli wrapper ([b0ad4be](https://gitea.deepak.science:2222/physics/deepdog/commit/b0ad4bead0d4762eb7f848f6e557f6d9b61200b9))
+
+### [0.7.9](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.8...0.7.9) (2024-04-21)
+
+
+### Features
+
+* adds ability to write custom dmc filters ([ea080ca](https://gitea.deepak.science:2222/physics/deepdog/commit/ea080ca1c7068042ce1e0a222d317f785a6b05f4))
+* adds tarucha phase calculation, using spin qubit precession rate noise ([3ae0783](https://gitea.deepak.science:2222/physics/deepdog/commit/3ae0783d00cbe6a76439c1d671f2cff621d8d0a8))
+
+### [0.7.8](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.7...0.7.8) (2024-02-29)
+
+
+### Bug Fixes
+
+* uses correct measurements ([5f534a6](https://gitea.deepak.science:2222/physics/deepdog/commit/5f534a60cc7c4838fcacee11a7e58b97d34e154a))
+
+### [0.7.7](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.6...0.7.7) (2024-02-29)
+
+
+### Bug Fixes
+
+* fixes phase calculation issue with setting input array ([48e41cb](https://gitea.deepak.science:2222/physics/deepdog/commit/48e41cbd2c58d4c4d2747822d618d7d55257643d))
+
+### [0.7.6](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.5...0.7.6) (2024-02-28)
+
+
+### Features
+
+* adds ability to use phase measurements only for correlations ([bb72e90](https://gitea.deepak.science:2222/physics/deepdog/commit/bb72e903d14704a3783daf2dbc1797b90880aa85))
+
+
+### Bug Fixes
+
+* fixes typeerror vs indexerror on bare float as cost in subset simulation ([65e1948](https://gitea.deepak.science:2222/physics/deepdog/commit/65e19488359d7f5656660da7da8f32ed474989c3))
+
+### [0.7.5](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.4...0.7.5) (2023-12-09)
+
+
+### Features
+
+* adds direct monte carlo package ([1741807](https://gitea.deepak.science:2222/physics/deepdog/commit/1741807be43d08fb51bc94518dd3b67585c04c20))
+* adds longchain logging if logging last generation ([b4e5f53](https://gitea.deepak.science:2222/physics/deepdog/commit/b4e5f5372682fc64c3734a96c4a899e018f127ce))
+* allows disabling timestamp in subset simulation bayes results ([9a4548d](https://gitea.deepak.science:2222/physics/deepdog/commit/9a4548def45a01f1f518135d4237c3dc09dcc342))
+
+### [0.7.4](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.3...0.7.4) (2023-07-27)
+
+
+### Features
+
+* adds configurable chunk size for the initial mc level 0 SS stage cost calculation to reduce memory usage ([9a7a3ff](https://gitea.deepak.science:2222/physics/deepdog/commit/9a7a3ff2c7ebe81d5e10647ce39844c372ff7b07))
+* allows for deepdog bayesrun with ss to not print csv to make snapshot testing possible ([8e6ead4](https://gitea.deepak.science:2222/physics/deepdog/commit/8e6ead416c9eba56f568f648d0df44caaa510cfe))
+
+
+### Bug Fixes
+
+* fixes bug if case of clamping necessary ([161bcf4](https://gitea.deepak.science:2222/physics/deepdog/commit/161bcf42addf331661c3929073688b9f2c13502c))
+* fixes bug with clamped probabilities being underestimated ([e6defc7](https://gitea.deepak.science:2222/physics/deepdog/commit/e6defc794871a48ac331023eb477bd235b78d6d0))
+
+### [0.7.3](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.2...0.7.3) (2023-07-27)
+
+
+### Features
+
+* adds utility options and avoids memory leak ([598dad1](https://gitea.deepak.science:2222/physics/deepdog/commit/598dad1e6dc8fc0b7a5b4a90c8e17bf744e8d98c))
+
+### [0.7.2](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.1...0.7.2) (2023-07-24)
+
+
+### Features
+
+* clamps results now ([9bb8fc5](https://gitea.deepak.science:2222/physics/deepdog/commit/9bb8fc50fe1bd1a285a333c5a396bfb6ac3176cf))
+
+
+### Bug Fixes
+
+* fixes clamping format etc. ([a170a3c](https://gitea.deepak.science:2222/physics/deepdog/commit/a170a3ce01adcec356e5aaab9abcc0ec4accd64b))
+
+### [0.7.1](https://gitea.deepak.science:2222/physics/deepdog/compare/0.7.0...0.7.1) (2023-07-24)
+
+
+### Features
+
+* adds subset simulation stuff ([33cab9a](https://gitea.deepak.science:2222/physics/deepdog/commit/33cab9ab4179cec13ae9e591a8ffc32df4dda989))
+
+## [0.7.0](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.7...0.7.0) (2023-05-01)
+
+
+### ⚠ BREAKING CHANGES
+
+* removes fastfilter parameter because it should never be needed
+
+### Features
+
+* adds pair capability to real spectrum run hopefully ([a089951](https://gitea.deepak.science:2222/physics/deepdog/commit/a089951bbefcd8a0b2efeb49b7a8090412cbb23d))
+* removes fastfilter parameter because it should never be needed ([a015daf](https://gitea.deepak.science:2222/physics/deepdog/commit/a015daf5ff6fa5f6155c8d7e02981b588840a5b0))
+
+### [0.6.7](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.6...0.6.7) (2023-04-14)
+
+
+### Features
+
+* adds option to cap core count for real spectrum run ([bf15f4a](https://gitea.deepak.science:2222/physics/deepdog/commit/bf15f4a7b7f59504983624e7d512ed7474372032))
+* adds option to cap core count for temp aware run ([12903b2](https://gitea.deepak.science:2222/physics/deepdog/commit/12903b2540cefb040174d230bc0d04719a6dc1b7))
+
+
+### Bug Fixes
+
+* avoids redefinition of core count in loop ([1cf4454](https://gitea.deepak.science:2222/physics/deepdog/commit/1cf44541531541088198bd4599d467df3e1acbcf))
+
+### [0.6.6](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.5...0.6.6) (2023-04-09)
+
+
+### Bug Fixes
+
+* removes bad logging in multiprocessing function ([8fd1b75](https://gitea.deepak.science:2222/physics/deepdog/commit/8fd1b75e1378301210bfa8f14dd09174bbd21414))
+
+### [0.6.5](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.4...0.6.5) (2023-04-09)
+
+
+### Features
+
+* adds temp aware guy using new pdme temp-flexible feature for bundling temp models ([de1ec3e](https://gitea.deepak.science:2222/physics/deepdog/commit/de1ec3e70062d418e0d4c89716905cc9313d2e26))
+
+### [0.6.4](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.3...0.6.4) (2022-08-13)
+
+
+### Features
+
+* Prints model names while running ([7ea1d71](https://gitea.deepak.science:2222/physics/deepdog/commit/7ea1d715f67e81c9fa841c5a62f1cc700ff7363d))
+
+### [0.6.3](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.2...0.6.3) (2022-06-12)
+
+
+### Features
+
+* adds fast filter variant ([2c5c122](https://gitea.deepak.science:2222/physics/deepdog/commit/2c5c1228209e51d17253f07470e2f1e6dc6872d7))
+* adds tester for fast filter real spectrum ([0a1a277](https://gitea.deepak.science:2222/physics/deepdog/commit/0a1a27759b0d4ab01da214b76ab14bf2b1fe00e3))
+
 ### [0.6.2](https://gitea.deepak.science:2222/physics/deepdog/compare/0.6.1...0.6.2) (2022-05-26)


--- a/20
+++ b/20
@@ -4,7 +4,7 @@ pipeline {
 		label 'deepdog'  // all your pods will be named with this prefix, followed by a unique id
 		idleMinutes 5  // how long the pod will live after no jobs have run on it
 		yamlFile 'jenkins/ci-agent-pod.yaml'  // path to the pod definition relative to the root of our project
-		defaultContainer 'python'  // define a default container if more than a few stages use it, will default to jnlp container
+		defaultContainer 'poetry'  // define a default container if more than a few stages use it, will default to jnlp container
 	  }
 	}

@@ -12,36 +12,30 @@ pipeline {
 		parallelsAlwaysFailFast()
 	}

-	environment {
-		POETRY_HOME="/opt/poetry"
-		POETRY_VERSION="1.1.12"
-	}
-
 	stages {
 		stage('Build') {
 			steps {
 				echo 'Building...'
 				sh 'python --version'
-				sh 'curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python'
-				sh '${POETRY_HOME}/bin/poetry --version'
-				sh '${POETRY_HOME}/bin/poetry install'
+				sh 'poetry --version'
+				sh 'poetry install'
 			}
 		}
 		stage('Test') {
 			parallel{
 				stage('pytest') {
 					steps {
-						sh '${POETRY_HOME}/bin/poetry run pytest'
+						sh 'poetry run pytest'
 					}
 				}
 				stage('lint') {
 					steps {
-						sh '${POETRY_HOME}/bin/poetry run flake8 deepdog tests'
+						sh 'poetry run flake8 deepdog tests'
 					}
 				}
 				stage('mypy') {
 					steps {
-						sh '${POETRY_HOME}/bin/poetry run mypy deepdog'
+						sh 'poetry run mypy deepdog'
 					}
 				}
 			}
@@ -57,7 +51,7 @@ pipeline {
 			}
 			steps {
 				echo 'Deploying...'
-				sh '${POETRY_HOME}/bin/poetry publish -u ${PYPI_USR} -p ${PYPI_PSW} --build'
+				sh 'poetry publish -u ${PYPI_USR} -p ${PYPI_PSW} --build'
 			}
 		}

--- a/README.md
+++ b/README.md
@@ -5,7 +5,7 @@
 [![Jenkins](https://img.shields.io/jenkins/build?jobUrl=https%3A%2F%2Fjenkins.deepak.science%2Fjob%2Fgitea-physics%2Fjob%2Fdeepdog%2Fjob%2Fmaster&style=flat-square)](https://jenkins.deepak.science/job/gitea-physics/job/deepdog/job/master/)
 ![Jenkins tests](https://img.shields.io/jenkins/tests?compact_message&jobUrl=https%3A%2F%2Fjenkins.deepak.science%2Fjob%2Fgitea-physics%2Fjob%2Fdeepdog%2Fjob%2Fmaster%2F&style=flat-square)
 ![Jenkins Coverage](https://img.shields.io/jenkins/coverage/cobertura?jobUrl=https%3A%2F%2Fjenkins.deepak.science%2Fjob%2Fgitea-physics%2Fjob%2Fdeepdog%2Fjob%2Fmaster%2F&style=flat-square)
-![Maintenance](https://img.shields.io/maintenance/yes/2022?style=flat-square)
+![Maintenance](https://img.shields.io/maintenance/yes/2024?style=flat-square)

 The DiPole DiaGnostic tool.

@@ -13,6 +13,13 @@ The DiPole DiaGnostic tool.

 `poetry install` to start locally

-Commit using [Conventional Commits](https://www.conventionalcommits.org/en/v1.0.0/), and when commits are on master, release with `doo release`.
+Commit using [Conventional Commits](https://www.conventionalcommits.org/en/v1.0.0/), and when commits are on master, release with `just release`.

+In general `just --list` has some of the useful stuff for figuring out what development tools there are.

+Poetry as an installer is good, even better is using Nix (maybe with direnv to automatically pick up the `devShell` from `flake.nix`).
+In either case `just` should handle actually calling things in a way that's agnostic to poetry as a runner or through nix.
+
+### local scripts
+`local_scripts` folder allows for scripts to be run using this code, but that probably isn't the most auditable for actual usage.
+The API is still only something I'm using so there's no guarantees yet that it will be stable; overall semantic versioning should help with API breaks.
--- a/deepdog/init.py
+++ b/deepdog/init.py
@@ -3,6 +3,8 @@ from deepdog.meta import __version__
 from deepdog.bayes_run import BayesRun
 from deepdog.bayes_run_simulpairs import BayesRunSimulPairs
 from deepdog.real_spectrum_run import RealSpectrumRun
+from deepdog.temp_aware_real_spectrum_run import TempAwareRealSpectrumRun
+from deepdog.bayes_run_with_ss import BayesRunWithSubspaceSimulation


 def get_version():
@@ -14,6 +16,8 @@ __all__ = [
 	"BayesRun",
 	"BayesRunSimulPairs",
 	"RealSpectrumRun",
+	"TempAwareRealSpectrumRun",
+	"BayesRunWithSubspaceSimulation",
 ]


--- a/deepdog/bayes_run_with_ss.py
+++ b/deepdog/bayes_run_with_ss.py
@@ -0,0 +1,261 @@
+import deepdog.subset_simulation
+import pdme.inputs
+import pdme.model
+import pdme.measurement.input_types
+import pdme.measurement.oscillating_dipole
+import pdme.util.fast_v_calc
+import pdme.util.fast_nonlocal_spectrum
+from typing import Sequence, Tuple, List, Optional
+import datetime
+import csv
+import logging
+import numpy
+import numpy.typing
+
+
+# TODO: remove hardcode
+CHUNKSIZE = 50
+
+# TODO: It's garbage to have this here duplicated from pdme.
+DotInput = Tuple[numpy.typing.ArrayLike, float]
+
+
+CLAMPING_FACTOR = 10
+
+_logger = logging.getLogger(__name__)
+
+
+class BayesRunWithSubspaceSimulation:
+	"""
+	A single Bayes run for a given set of dots.
+
+	Parameters
+	----------
+	dot_inputs : Sequence[DotInput]
+	The dot inputs for this bayes run.
+
+	models_with_names : Sequence[Tuple(str, pdme.model.DipoleModel)]
+	The models to evaluate.
+
+	actual_model : pdme.model.DipoleModel
+	The model which is actually correct.
+
+	filename_slug : str
+	The filename slug to include.
+
+	run_count: int
+	The number of runs to do.
+	"""
+
+	def __init__(
+		self,
+		dot_positions: Sequence[numpy.typing.ArrayLike],
+		frequency_range: Sequence[float],
+		models_with_names: Sequence[Tuple[str, pdme.model.DipoleModel]],
+		actual_model: pdme.model.DipoleModel,
+		filename_slug: str,
+		max_frequency: float = 20,
+		end_threshold: float = None,
+		run_count=100,
+		chunksize: int = CHUNKSIZE,
+		ss_n_c: int = 500,
+		ss_n_s: int = 100,
+		ss_m_max: int = 15,
+		ss_target_cost: Optional[float] = None,
+		ss_level_0_seed: int = 200,
+		ss_mcmc_seed: int = 20,
+		ss_use_adaptive_steps=True,
+		ss_default_phi_step=0.01,
+		ss_default_theta_step=0.01,
+		ss_default_r_step=0.01,
+		ss_default_w_log_step=0.01,
+		ss_default_upper_w_log_step=4,
+		ss_dump_last_generation=False,
+		ss_initial_costs_chunk_size=100,
+		write_output_to_bayesruncsv=True,
+		use_timestamp_for_output=True,
+	) -> None:
+		self.dot_inputs = pdme.inputs.inputs_with_frequency_range(
+			dot_positions, frequency_range
+		)
+		self.dot_inputs_array = pdme.measurement.input_types.dot_inputs_to_array(
+			self.dot_inputs
+		)
+
+		self.models_with_names = models_with_names
+		self.models = [model for (_, model) in models_with_names]
+		self.model_names = [name for (name, _) in models_with_names]
+		self.actual_model = actual_model
+
+		self.n: int
+		try:
+			self.n = self.actual_model.n  # type: ignore
+		except AttributeError:
+			self.n = 1
+
+		self.model_count = len(self.models)
+
+		self.csv_fields = []
+		for i in range(self.n):
+			self.csv_fields.extend(
+				[
+					f"dipole_moment_{i+1}",
+					f"dipole_location_{i+1}",
+					f"dipole_frequency_{i+1}",
+				]
+			)
+		self.compensate_zeros = True
+		self.chunksize = chunksize
+		for name in self.model_names:
+			self.csv_fields.extend([f"{name}_likelihood", f"{name}_prob"])
+
+		self.probabilities = [1 / self.model_count] * self.model_count
+
+		if use_timestamp_for_output:
+			timestamp = datetime.datetime.now().strftime("%Y%m%d-%H%M%S")
+			self.filename = f"{timestamp}-{filename_slug}.bayesrunwithss.csv"
+		else:
+			self.filename = f"{filename_slug}.bayesrunwithss.csv"
+		self.max_frequency = max_frequency
+
+		if end_threshold is not None:
+			if 0 < end_threshold < 1:
+				self.end_threshold: float = end_threshold
+				self.use_end_threshold = True
+				_logger.info(f"Will abort early, at {self.end_threshold}.")
+			else:
+				raise ValueError(
+					f"end_threshold should be between 0 and 1, but is actually {end_threshold}"
+				)
+
+		self.ss_n_c = ss_n_c
+		self.ss_n_s = ss_n_s
+		self.ss_m_max = ss_m_max
+		self.ss_target_cost = ss_target_cost
+		self.ss_level_0_seed = ss_level_0_seed
+		self.ss_mcmc_seed = ss_mcmc_seed
+		self.ss_use_adaptive_steps = ss_use_adaptive_steps
+		self.ss_default_phi_step = ss_default_phi_step
+		self.ss_default_theta_step = ss_default_theta_step
+		self.ss_default_r_step = ss_default_r_step
+		self.ss_default_w_log_step = ss_default_w_log_step
+		self.ss_default_upper_w_log_step = ss_default_upper_w_log_step
+		self.ss_dump_last_generation = ss_dump_last_generation
+		self.ss_initial_costs_chunk_size = ss_initial_costs_chunk_size
+		self.run_count = run_count
+
+		self.write_output_to_csv = write_output_to_bayesruncsv
+
+	def go(self) -> Sequence:
+
+		if self.write_output_to_csv:
+			with open(self.filename, "a", newline="") as outfile:
+				writer = csv.DictWriter(
+					outfile, fieldnames=self.csv_fields, dialect="unix"
+				)
+				writer.writeheader()
+
+		return_result = []
+
+		for run in range(1, self.run_count + 1):
+
+			# Generate the actual dipoles
+			actual_dipoles = self.actual_model.get_dipoles(self.max_frequency)
+
+			measurements = actual_dipoles.get_dot_measurements(self.dot_inputs)
+
+			_logger.info(f"Going to work on dipole at {actual_dipoles.dipoles}")
+
+			# define a new seed sequence for each run
+
+			results = []
+			_logger.debug("Going to iterate over models now")
+			for model_count, model in enumerate(self.models_with_names):
+				_logger.debug(f"Doing model #{model_count}, {model[0]}")
+				subset_run = deepdog.subset_simulation.SubsetSimulation(
+					model,
+					self.dot_inputs,
+					measurements,
+					self.ss_n_c,
+					self.ss_n_s,
+					self.ss_m_max,
+					self.ss_target_cost,
+					self.ss_level_0_seed,
+					self.ss_mcmc_seed,
+					self.ss_use_adaptive_steps,
+					self.ss_default_phi_step,
+					self.ss_default_theta_step,
+					self.ss_default_r_step,
+					self.ss_default_w_log_step,
+					self.ss_default_upper_w_log_step,
+					initial_cost_chunk_size=self.ss_initial_costs_chunk_size,
+					keep_probs_list=False,
+					dump_last_generation_to_file=self.ss_dump_last_generation,
+				)
+				results.append(subset_run.execute())
+
+			_logger.debug("Done, constructing output now")
+			row = {
+				"dipole_moment_1": actual_dipoles.dipoles[0].p,
+				"dipole_location_1": actual_dipoles.dipoles[0].s,
+				"dipole_frequency_1": actual_dipoles.dipoles[0].w,
+			}
+			for i in range(1, self.n):
+				try:
+					current_dipoles = actual_dipoles.dipoles[i]
+					row[f"dipole_moment_{i+1}"] = current_dipoles.p
+					row[f"dipole_location_{i+1}"] = current_dipoles.s
+					row[f"dipole_frequency_{i+1}"] = current_dipoles.w
+				except IndexError:
+					_logger.info(f"Not writing anymore, saw end after {i}")
+					break
+
+			likelihoods: List[float] = []
+
+			for (name, result) in zip(self.model_names, results):
+				if result.over_target_likelihood is None:
+					if result.lowest_likelihood is None:
+						_logger.error(f"result {result} looks bad")
+						clamped_likelihood = 10**-15
+					else:
+						clamped_likelihood = result.lowest_likelihood / CLAMPING_FACTOR
+					_logger.warning(
+						f"got a none result, clamping to {clamped_likelihood}"
+					)
+				else:
+					clamped_likelihood = result.over_target_likelihood
+				likelihoods.append(clamped_likelihood)
+				row[f"{name}_likelihood"] = clamped_likelihood
+
+			success_weight = sum(
+				[
+					likelihood * prob
+					for likelihood, prob in zip(likelihoods, self.probabilities)
+				]
+			)
+			new_probabilities = [
+				likelihood * old_prob / success_weight
+				for likelihood, old_prob in zip(likelihoods, self.probabilities)
+			]
+			self.probabilities = new_probabilities
+			for name, probability in zip(self.model_names, self.probabilities):
+				row[f"{name}_prob"] = probability
+			_logger.info(row)
+			return_result.append(row)
+
+			if self.write_output_to_csv:
+				with open(self.filename, "a", newline="") as outfile:
+					writer = csv.DictWriter(
+						outfile, fieldnames=self.csv_fields, dialect="unix"
+					)
+					writer.writerow(row)
+
+			if self.use_end_threshold:
+				max_prob = max(self.probabilities)
+				if max_prob > self.end_threshold:
+					_logger.info(
+						f"Aborting early, because {max_prob} is greater than {self.end_threshold}"
+					)
+					break
+
+		return return_result
--- a/deepdog/cli/init.py
+++ b/deepdog/cli/init.py
--- a/deepdog/cli/probs/init.py
+++ b/deepdog/cli/probs/init.py
@@ -0,0 +1,5 @@
+from deepdog.cli.probs.main import wrapped_main
+
+__all__ = [
+	"wrapped_main",
+]
--- a/deepdog/cli/probs/args.py
+++ b/deepdog/cli/probs/args.py
@@ -0,0 +1,63 @@
+import argparse
+import os
+
+
+def parse_args() -> argparse.Namespace:
+	def dir_path(path):
+		if os.path.isdir(path):
+			return path
+		else:
+			raise argparse.ArgumentTypeError(f"readable_dir:{path} is not a valid path")
+
+	parser = argparse.ArgumentParser(
+		"probs", description="Calculating probability from finished bayesrun"
+	)
+	parser.add_argument(
+		"--log_file",
+		type=str,
+		help="A filename for logging to, if not provided will only log to stderr",
+		default=None,
+	)
+	parser.add_argument(
+		"--bayesrun-directory",
+		"-d",
+		type=dir_path,
+		help="The directory to search for bayesrun files, defaulting to cwd if not passed",
+		default=".",
+	)
+	parser.add_argument(
+		"--indexify-json",
+		help="A json file with the indexify config for parsing job indexes. Will skip if not present",
+		default="",
+	)
+	parser.add_argument(
+		"--seed-index",
+		type=int,
+		help='take an integer to append as a "seed" key with range at end of indexify dict. Skip if <= 0',
+		default=0,
+	)
+	parser.add_argument(
+		"--seed-fieldname",
+		type=str,
+		help='if --seed-index is set, the fieldname to append to the indexifier. "seed" by default',
+		default="seed",
+	)
+	parser.add_argument(
+		"--coalesced-keys",
+		type=str,
+		help="A comma separated list of strings over which to coalesce data. By default coalesce over all fields within model names, ignore file level names",
+		default="",
+	)
+	parser.add_argument(
+		"--uncoalesced-outfile",
+		type=str,
+		help="output filename for uncoalesced data. If not provided, will not be written",
+		default=None,
+	)
+	parser.add_argument(
+		"--coalesced-outfile",
+		type=str,
+		help="output filename for coalesced data. If not provided, will not be written",
+		default=None,
+	)
+	return parser.parse_args()
--- a/deepdog/cli/probs/dicts.py
+++ b/deepdog/cli/probs/dicts.py
@@ -0,0 +1,178 @@
+import typing
+from deepdog.results import BayesrunOutput
+import logging
+import csv
+import tqdm
+
+_logger = logging.getLogger(__name__)
+
+
+def build_model_dict(
+	bayes_outputs: typing.Sequence[BayesrunOutput],
+) -> typing.Dict[
+	typing.Tuple, typing.Dict[typing.Tuple, typing.Dict["str", typing.Any]]
+]:
+	"""
+	Maybe someday do something smarter with the coalescing and stuff but don't want to so i won't
+	"""
+	# assume that everything is well formatted and the keys are the same across entire list and initialise list of keys.
+	# model dict will contain a model_key: {calculation_dict} where each calculation_dict represents a single calculation for that model,
+	# the uncoalesced version, keyed by the specific file keys
+	model_dict: typing.Dict[
+		typing.Tuple, typing.Dict[typing.Tuple, typing.Dict["str", typing.Any]]
+	] = {}
+
+	_logger.info("building model dict")
+	for out in tqdm.tqdm(bayes_outputs, desc="reading outputs", leave=False):
+		for model_result in out.results:
+			model_key = tuple(v for v in model_result.parsed_model_keys.values())
+			if model_key not in model_dict:
+				model_dict[model_key] = {}
+			calculation_dict = model_dict[model_key]
+			calculation_key = tuple(v for v in out.data.values())
+			if calculation_key not in calculation_dict:
+				calculation_dict[calculation_key] = {
+					"_model_key_dict": model_result.parsed_model_keys,
+					"_calculation_key_dict": out.data,
+					"success": model_result.success,
+					"count": model_result.count,
+				}
+			else:
+				raise ValueError(
+					f"Got {calculation_key} twice for model_key {model_key}"
+				)
+
+	return model_dict
+
+
+def write_uncoalesced_dict(
+	uncoalesced_output_filename: typing.Optional[str],
+	uncoalesced_model_dict: typing.Dict[
+		typing.Tuple, typing.Dict[typing.Tuple, typing.Dict["str", typing.Any]]
+	],
+):
+	if uncoalesced_output_filename is None or uncoalesced_output_filename == "":
+		_logger.warning("Not provided a uncoalesced filename, not going to try")
+		return
+
+	first_value = next(iter(next(iter(uncoalesced_model_dict.values())).values()))
+	model_field_names = set(first_value["_model_key_dict"].keys())
+	calculation_field_names = set(first_value["_calculation_key_dict"].keys())
+	if not (set(model_field_names).isdisjoint(calculation_field_names)):
+		_logger.info(f"Detected model field names {model_field_names}")
+		_logger.info(f"Detected calculation field names {calculation_field_names}")
+		raise ValueError(
+			f"model field names {model_field_names} and calculation {calculation_field_names} have an overlap, which is possibly a problem"
+		)
+	collected_fieldnames = list(model_field_names)
+	collected_fieldnames.extend(calculation_field_names)
+	collected_fieldnames.extend(["success", "count"])
+	_logger.info(f"Full uncoalesced fieldnames are {collected_fieldnames}")
+	with open(uncoalesced_output_filename, "w", newline="") as uncoalesced_output_file:
+		writer = csv.DictWriter(
+			uncoalesced_output_file, fieldnames=collected_fieldnames
+		)
+		writer.writeheader()
+
+		for model_dict in uncoalesced_model_dict.values():
+			for calculation in model_dict.values():
+				row = calculation["_model_key_dict"].copy()
+				row.update(calculation["_calculation_key_dict"].copy())
+				row.update(
+					{
+						"success": calculation["success"],
+						"count": calculation["count"],
+					}
+				)
+				writer.writerow(row)
+
+
+def coalesced_dict(
+	uncoalesced_model_dict: typing.Dict[
+		typing.Tuple, typing.Dict[typing.Tuple, typing.Dict["str", typing.Any]]
+	],
+	minimum_count: float = 0.1,
+):
+	"""
+	pass in uncoalesced dict
+	the minimum_count field is what we use to make sure our probs are never zero
+	"""
+	coalesced_dict = {}
+
+	# we are already iterating so for no reason because performance really doesn't matter let's count the keys ourselves
+	num_keys = 0
+
+	# first pass coalesce
+	for model_key, model_dict in uncoalesced_model_dict.items():
+		num_keys += 1
+		for calculation in model_dict.values():
+			if model_key not in coalesced_dict:
+				coalesced_dict[model_key] = {
+					"_model_key_dict": calculation["_model_key_dict"].copy(),
+					"calculations_coalesced": 0,
+					"count": 0,
+					"success": 0,
+				}
+			sub_dict = coalesced_dict[model_key]
+			sub_dict["calculations_coalesced"] += 1
+			sub_dict["count"] += calculation["count"]
+			sub_dict["success"] += calculation["success"]
+
+	# second pass do probability calculation
+
+	prior = 1 / num_keys
+	_logger.info(f"Got {num_keys} model keys, so our prior will be {prior}")
+
+	total_weight = 0
+	for coalesced_model_dict in coalesced_dict.values():
+		model_weight = (
+			max(minimum_count, coalesced_model_dict["success"])
+			/ coalesced_model_dict["count"]
+		) * prior
+		total_weight += model_weight
+
+	total_prob = 0
+	for coalesced_model_dict in coalesced_dict.values():
+		model_weight = (
+			max(minimum_count, coalesced_model_dict["success"])
+			/ coalesced_model_dict["count"]
+		)
+		prob = model_weight * prior / total_weight
+		coalesced_model_dict["prob"] = prob
+		total_prob += prob
+
+	_logger.debug(
+		f"Got a total probability of {total_prob}, which should be close to 1 up to float/rounding error"
+	)
+	return coalesced_dict
+
+
+def write_coalesced_dict(
+	coalesced_output_filename: typing.Optional[str],
+	coalesced_model_dict: typing.Dict[typing.Tuple, typing.Dict["str", typing.Any]],
+):
+	if coalesced_output_filename is None or coalesced_output_filename == "":
+		_logger.warning("Not provided a uncoalesced filename, not going to try")
+		return
+
+	first_value = next(iter(coalesced_model_dict.values()))
+	model_field_names = set(first_value["_model_key_dict"].keys())
+	_logger.info(f"Detected model field names {model_field_names}")
+
+	collected_fieldnames = list(model_field_names)
+	collected_fieldnames.extend(["calculations_coalesced", "success", "count", "prob"])
+	with open(coalesced_output_filename, "w", newline="") as coalesced_output_file:
+		writer = csv.DictWriter(coalesced_output_file, fieldnames=collected_fieldnames)
+		writer.writeheader()
+
+		for model_dict in coalesced_model_dict.values():
+			row = model_dict["_model_key_dict"].copy()
+			row.update(
+				{
+					"calculations_coalesced": model_dict["calculations_coalesced"],
+					"success": model_dict["success"],
+					"count": model_dict["count"],
+					"prob": model_dict["prob"],
+				}
+			)
+			writer.writerow(row)
--- a/deepdog/cli/probs/main.py
+++ b/deepdog/cli/probs/main.py
@@ -0,0 +1,95 @@
+import logging
+import argparse
+import json
+import deepdog.cli.probs.args
+import deepdog.cli.probs.dicts
+import deepdog.results
+import deepdog.indexify
+import pathlib
+import tqdm
+import tqdm.contrib.logging
+
+
+_logger = logging.getLogger(__name__)
+
+
+def set_up_logging(log_file: str):
+
+	log_pattern = "%(asctime)s | %(levelname)-7s | %(name)s:%(lineno)d | %(message)s"
+	if log_file is None:
+		handlers = [
+			logging.StreamHandler(),
+		]
+	else:
+		handlers = [logging.StreamHandler(), logging.FileHandler(log_file)]
+	logging.basicConfig(
+		level=logging.DEBUG,
+		format=log_pattern,
+		# it's okay to ignore this mypy error because who cares about logger handler types
+		handlers=handlers,  # type: ignore
+	)
+	logging.captureWarnings(True)
+
+
+def main(args: argparse.Namespace):
+	"""
+	Main function with passed in arguments and no additional logging setup in case we want to extract out later
+	"""
+
+	with tqdm.contrib.logging.logging_redirect_tqdm():
+		_logger.info(f"args: {args}")
+
+		try:
+			if args.coalesced_keys:
+				raise NotImplementedError(
+					"Currently not supporting coalesced keys, but maybe in future"
+				)
+		except AttributeError:
+			# we don't care if this is missing because we don't actually want it to be there
+			pass
+
+		indexifier = None
+		if args.indexify_json:
+			with open(args.indexify_json, "r") as indexify_json_file:
+				indexify_data = json.load(indexify_json_file)
+				if args.seed_index > 0:
+					indexify_data[args.seed_fieldname] = list(range(args.seed_index))
+				# _logger.debug(f"Indexifier data looks like {indexify_data}")
+				indexifier = deepdog.indexify.Indexifier(indexify_data)
+
+		bayes_dir = pathlib.Path(args.bayesrun_directory)
+		out_files = [f for f in bayes_dir.iterdir() if f.name.endswith("bayesrun.csv")]
+		_logger.info(
+			f"Reading {len(out_files)} bayesrun.csv files in directory {args.bayesrun_directory}"
+		)
+		# _logger.info(out_files)
+		parsed_output_files = [
+			deepdog.results.read_output_file(f, indexifier)
+			for f in tqdm.tqdm(out_files, desc="reading files", leave=False)
+		]
+
+		_logger.info("building uncoalesced dict")
+		uncoalesced_dict = deepdog.cli.probs.dicts.build_model_dict(parsed_output_files)
+
+		if "uncoalesced_outfile" in args and args.uncoalesced_outfile:
+			deepdog.cli.probs.dicts.write_uncoalesced_dict(
+				args.uncoalesced_outfile, uncoalesced_dict
+			)
+		else:
+			_logger.info("Skipping writing uncoalesced")
+
+		_logger.info("building coalesced dict")
+		coalesced = deepdog.cli.probs.dicts.coalesced_dict(uncoalesced_dict)
+
+		if "coalesced_outfile" in args and args.coalesced_outfile:
+			deepdog.cli.probs.dicts.write_coalesced_dict(
+				args.coalesced_outfile, coalesced
+			)
+		else:
+			_logger.info("Skipping writing coalesced")
+
+
+def wrapped_main():
+	args = deepdog.cli.probs.args.parse_args()
+	set_up_logging(args.log_file)
+	main(args)
--- a/deepdog/direct_monte_carlo/init.py
+++ b/deepdog/direct_monte_carlo/init.py
@@ -0,0 +1,6 @@
+from deepdog.direct_monte_carlo.direct_mc import (
+	DirectMonteCarloRun,
+	DirectMonteCarloConfig,
+)
+
+__all__ = ["DirectMonteCarloRun", "DirectMonteCarloConfig"]
--- a/deepdog/direct_monte_carlo/compose_filter.py
+++ b/deepdog/direct_monte_carlo/compose_filter.py
@@ -0,0 +1,14 @@
+from typing import Sequence
+from deepdog.direct_monte_carlo.direct_mc import DirectMonteCarloFilter
+import numpy
+
+
+class ComposedDMCFilter(DirectMonteCarloFilter):
+	def __init__(self, filters: Sequence[DirectMonteCarloFilter]):
+		self.filters = filters
+
+	def filter_samples(self, samples: numpy.ndarray) -> numpy.ndarray:
+		current_sample = samples
+		for filter in self.filters:
+			current_sample = filter.filter_samples(current_sample)
+		return current_sample
--- a/deepdog/direct_monte_carlo/direct_mc.py
+++ b/deepdog/direct_monte_carlo/direct_mc.py
@@ -0,0 +1,174 @@
+import pdme.model
+import pdme.measurement
+import pdme.measurement.input_types
+import pdme.subspace_simulation
+from typing import Tuple, Dict, NewType, Any
+from dataclasses import dataclass
+import logging
+import numpy
+import numpy.random
+import pdme.util.fast_v_calc
+
+_logger = logging.getLogger(__name__)
+
+
+@dataclass
+class DirectMonteCarloResult:
+	successes: int
+	monte_carlo_count: int
+	likelihood: float
+
+
+@dataclass
+class DirectMonteCarloConfig:
+	monte_carlo_count_per_cycle: int = 10000
+	monte_carlo_cycles: int = 10
+	target_success: int = 100
+	max_monte_carlo_cycles_steps: int = 10
+	monte_carlo_seed: int = 1234
+	write_successes_to_file: bool = False
+	tag: str = ""
+
+
+# Aliasing dict as a generic data container
+DirectMonteCarloData = NewType("DirectMonteCarloData", Dict[str, Any])
+
+
+class DirectMonteCarloFilter:
+	"""
+	Abstract class for filtering out samples matching some criteria. Initialise with data as needed,
+	then filter out samples as needed.
+	"""
+
+	def filter_samples(self, samples: numpy.ndarray) -> numpy.ndarray:
+		raise NotImplementedError
+
+
+class DirectMonteCarloRun:
+	"""
+	A single model Direct Monte Carlo run, currently implemented only using single threading.
+	An encapsulation of the steps needed for a Bayes run.
+
+	Parameters
+	----------
+	model_name_pair : Sequence[Tuple(str, pdme.model.DipoleModel)]
+	The model to evaluate, with name.
+
+	measurements: Sequence[pdme.measurement.DotRangeMeasurement]
+	The measurements as dot ranges to use as the bounds for the Monte Carlo calculation.
+
+	monte_carlo_count_per_cycle: int
+	The number of Monte Carlo iterations to use in a single cycle calculation.
+
+	monte_carlo_cycles: int
+	The number of cycles to use in each step.
+	Increasing monte_carlo_count_per_cycle increases memory usage (and runtime), while this increases runtime, allowing
+	control over memory use.
+
+	target_success: int
+	The number of successes to target before exiting early.
+	Should likely be ~100 but can go higher to.
+
+	max_monte_carlo_cycles_steps: int
+	The number of steps to use. Each step consists of monte_carlo_cycles cycles, each of which has monte_carlo_count_per_cycle iterations.
+
+	monte_carlo_seed: int
+	The seed to use for the RNG.
+	"""
+
+	def __init__(
+		self,
+		model_name_pair: Tuple[str, pdme.model.DipoleModel],
+		filter: DirectMonteCarloFilter,
+		config: DirectMonteCarloConfig,
+	):
+		self.model_name, self.model = model_name_pair
+
+		# self.measurements = measurements
+		# self.dot_inputs = [(measure.r, measure.f) for measure in self.measurements]
+
+		# self.dot_inputs_array = pdme.measurement.input_types.dot_inputs_to_array(
+		# 	self.dot_inputs
+		# )
+
+		self.config = config
+		self.filter = filter
+		# (
+		# 	self.lows,
+		# 	self.highs,
+		# ) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
+		# 	self.measurements
+		# )
+
+	def _single_run(self, seed) -> numpy.ndarray:
+		rng = numpy.random.default_rng(seed)
+
+		sample_dipoles = self.model.get_monte_carlo_dipole_inputs(
+			self.config.monte_carlo_count_per_cycle, -1, rng
+		)
+
+		current_sample = sample_dipoles
+
+		return self.filter.filter_samples(current_sample)
+		# for di, low, high in zip(self.dot_inputs_array, self.lows, self.highs):
+
+		# 	if len(current_sample) < 1:
+		# 		break
+		# 	vals = pdme.util.fast_v_calc.fast_vs_for_dipoleses(
+		# 		numpy.array([di]), current_sample
+		# 	)
+
+		# 	current_sample = current_sample[
+		# 		numpy.all((vals > low) & (vals < high), axis=1)
+		# 	]
+		# return current_sample
+
+	def execute(self) -> DirectMonteCarloResult:
+		step_count = 0
+		total_success = 0
+		total_count = 0
+
+		count_per_step = (
+			self.config.monte_carlo_count_per_cycle * self.config.monte_carlo_cycles
+		)
+		seed_sequence = numpy.random.SeedSequence(self.config.monte_carlo_seed)
+		while (step_count < self.config.max_monte_carlo_cycles_steps) and (
+			total_success < self.config.target_success
+		):
+			_logger.debug(f"Executing step {step_count}")
+			for cycle_i, seed in enumerate(
+				seed_sequence.spawn(self.config.monte_carlo_cycles)
+			):
+				cycle_success_configs = self._single_run(seed)
+				cycle_success_count = len(cycle_success_configs)
+				if cycle_success_count > 0:
+					_logger.debug(
+						f"For cycle {cycle_i} received {cycle_success_count} successes"
+					)
+					_logger.debug(cycle_success_configs)
+					if self.config.write_successes_to_file:
+						sorted_by_freq = numpy.array(
+							[
+								pdme.subspace_simulation.sort_array_of_dipoles_by_frequency(
+									dipole_config
+								)
+								for dipole_config in cycle_success_configs
+							]
+						)
+						dipole_count = numpy.array(cycle_success_configs).shape[1]
+						for n in range(dipole_count):
+							numpy.savetxt(
+								f"{self.config.tag}_{step_count}_{cycle_i}_dipole_{n}.csv",
+								sorted_by_freq[:, n],
+								delimiter=",",
+							)
+				total_success += cycle_success_count
+			_logger.debug(f"At end of step {step_count} have {total_success} successes")
+			step_count += 1
+			total_count += count_per_step
+
+		return DirectMonteCarloResult(
+			successes=total_success,
+			monte_carlo_count=total_count,
+			likelihood=total_success / total_count,
+		)
--- a/deepdog/direct_monte_carlo/dmc_filters.py
+++ b/deepdog/direct_monte_carlo/dmc_filters.py
@@ -0,0 +1,143 @@
+from numpy import ndarray
+from deepdog.direct_monte_carlo.direct_mc import DirectMonteCarloFilter
+from typing import Sequence
+import pdme.measurement
+import pdme.measurement.input_types
+import pdme.util.fast_nonlocal_spectrum
+import pdme.util.fast_v_calc
+import numpy
+
+
+class SingleDotPotentialFilter(DirectMonteCarloFilter):
+	def __init__(self, measurements: Sequence[pdme.measurement.DotRangeMeasurement]):
+		self.measurements = measurements
+		self.dot_inputs = [(measure.r, measure.f) for measure in self.measurements]
+
+		self.dot_inputs_array = pdme.measurement.input_types.dot_inputs_to_array(
+			self.dot_inputs
+		)
+		(
+			self.lows,
+			self.highs,
+		) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
+			self.measurements
+		)
+
+	def filter_samples(self, samples: ndarray) -> ndarray:
+		current_sample = samples
+		for di, low, high in zip(self.dot_inputs_array, self.lows, self.highs):
+
+			if len(current_sample) < 1:
+				break
+			vals = pdme.util.fast_v_calc.fast_vs_for_dipoleses(
+				numpy.array([di]), current_sample
+			)
+
+			current_sample = current_sample[
+				numpy.all((vals > low) & (vals < high), axis=1)
+			]
+		return current_sample
+
+
+class DoubleDotSpinQubitFrequencyFilter(DirectMonteCarloFilter):
+	def __init__(
+		self,
+		pair_phase_measurements: Sequence[pdme.measurement.DotPairRangeMeasurement],
+	):
+		self.pair_phase_measurements = pair_phase_measurements
+		self.dot_pair_inputs = [
+			(measure.r1, measure.r2, measure.f)
+			for measure in self.pair_phase_measurements
+		]
+		self.dot_pair_inputs_array = (
+			pdme.measurement.input_types.dot_pair_inputs_to_array(self.dot_pair_inputs)
+		)
+		(
+			self.pair_phase_lows,
+			self.pair_phase_highs,
+		) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
+			self.pair_phase_measurements
+		)
+
+	def fast_s_spin_qubit_tarucha_nonlocal_dipoleses(
+		self, dot_pair_inputs: numpy.ndarray, dipoleses: numpy.ndarray
+	) -> numpy.ndarray:
+		"""
+		No error correction here baby.
+		"""
+		ps = dipoleses[:, :, 0:3]
+		ss = dipoleses[:, :, 3:6]
+		ws = dipoleses[:, :, 6]
+
+		r1s = dot_pair_inputs[:, 0, 0:3]
+		r2s = dot_pair_inputs[:, 1, 0:3]
+		f1s = dot_pair_inputs[:, 0, 3]
+		# Don't actually need this
+		# f2s = dot_pair_inputs[:, 1, 3]
+
+		diffses1 = r1s[:, None] - ss[:, None, :]
+		diffses2 = r2s[:, None] - ss[:, None, :]
+
+		norms1 = numpy.linalg.norm(diffses1, axis=3)
+		norms2 = numpy.linalg.norm(diffses2, axis=3)
+
+		alphses1 = (
+			(
+				3
+				* numpy.transpose(
+					numpy.transpose(
+						numpy.einsum("abcd,acd->abc", diffses1, ps) / (norms1**2)
+					)
+					* numpy.transpose(diffses1)
+				)[:, :, :, 0]
+			)
+			- ps[:, :, 0, numpy.newaxis]
+		) / (norms1**3)
+		alphses2 = (
+			(
+				3
+				* numpy.transpose(
+					numpy.transpose(
+						numpy.einsum("abcd,acd->abc", diffses2, ps) / (norms2**2)
+					)
+					* numpy.transpose(diffses2)
+				)[:, :, :, 0]
+			)
+			- ps[:, :, 0, numpy.newaxis]
+		) / (norms2**3)
+
+		bses = (1 / numpy.pi) * (
+			ws[:, None, :] / (f1s[:, None] ** 2 + ws[:, None, :] ** 2)
+		)
+
+		return numpy.einsum("...j->...", alphses1 * alphses2 * bses)
+
+	def filter_samples(self, samples: ndarray) -> ndarray:
+		current_sample = samples
+
+		for pi, plow, phigh in zip(
+			self.dot_pair_inputs_array, self.pair_phase_lows, self.pair_phase_highs
+		):
+			if len(current_sample) < 1:
+				break
+
+			###
+			# This should be  abstracted out, but we're going to dump it here for time pressure's sake
+			###
+			# vals = pdme.util.fast_nonlocal_spectrum.signarg(
+			# 	pdme.util.fast_nonlocal_spectrum.fast_s_nonlocal_dipoleses(
+			# 		numpy.array([pi]), current_sample
+			# 	)
+			#
+			vals = pdme.util.fast_nonlocal_spectrum.signarg(
+				self.fast_s_spin_qubit_tarucha_nonlocal_dipoleses(
+					numpy.array([pi]), current_sample
+				)
+			)
+			current_sample = current_sample[
+				numpy.all(
+					((vals > plow) & (vals < phigh)) | ((vals < plow) & (vals > phigh)),
+					axis=1,
+				)
+			]
+		return current_sample
--- a/deepdog/indexify/init.py
+++ b/deepdog/indexify/init.py
@@ -0,0 +1,58 @@
+"""
+Probably should just include a way to handle the indexify function I reuse so much.
+
+All about breaking an integer into a tuple of values from lists, which is useful because of how we do CHTC runs.
+"""
+import itertools
+import typing
+import logging
+import math
+
+_logger = logging.getLogger(__name__)
+
+
+# from https://stackoverflow.com/questions/5228158/cartesian-product-of-a-dictionary-of-lists
+def _dict_product(dicts):
+	"""
+	>>> list(dict_product(dict(number=[1,2], character='ab')))
+	[{'character': 'a', 'number': 1},
+	{'character': 'a', 'number': 2},
+	{'character': 'b', 'number': 1},
+	{'character': 'b', 'number': 2}]
+	"""
+	return list(dict(zip(dicts.keys(), x)) for x in itertools.product(*dicts.values()))
+
+
+class Indexifier:
+	"""
+	The order of keys is very important, but collections.OrderedDict is no longer needed in python 3.7.
+	I think it's okay to rely on that.
+	"""
+
+	def __init__(self, list_dict: typing.Dict[str, typing.Sequence]):
+		self.dict = list_dict
+
+	def indexify(self, n: int) -> typing.Dict[str, typing.Any]:
+		product_dict = _dict_product(self.dict)
+		return product_dict[n]
+
+	def _indexify_indices(self, n: int) -> typing.Sequence[int]:
+		"""
+		legacy indexify from old scripts, copypast.
+		could be used like
+		>>> ret = {}
+		>>> for k, i in zip(self.dict.keys(), self._indexify_indices):
+		>>>		ret[k] = self.dict[k][i]
+		>>> return ret
+		"""
+		weights = [len(v) for v in self.dict.values()]
+		N = math.prod(weights)
+		curr_n = n
+		curr_N = N
+		out = []
+		for w in weights[:-1]:
+			# print(f"current: {curr_N}, {curr_n}, {curr_n // w}")
+			curr_N = curr_N // w  # should be int division anyway
+			out.append(curr_n // curr_N)
+			curr_n = curr_n % curr_N
+		return out
--- a/deepdog/real_spectrum_run.py
+++ b/deepdog/real_spectrum_run.py
@@ -5,7 +5,7 @@ import pdme.measurement.input_types
 import pdme.measurement.oscillating_dipole
 import pdme.util.fast_v_calc
 import pdme.util.fast_nonlocal_spectrum
-from typing import Sequence, Tuple, List, Dict, Union
+from typing import Sequence, Tuple, List, Dict, Union, Optional
 import datetime
 import csv
 import multiprocessing
@@ -20,7 +20,186 @@ CHUNKSIZE = 50
 _logger = logging.getLogger(__name__)


-def get_a_result(input) -> int:
+def get_a_result_fast_filter_pairs(input) -> int:
+	(
+		model,
+		dot_inputs,
+		lows,
+		highs,
+		pair_inputs,
+		pair_lows,
+		pair_highs,
+		monte_carlo_count,
+		seed,
+	) = input
+
+	rng = numpy.random.default_rng(seed)
+	# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
+	sample_dipoles = model.get_monte_carlo_dipole_inputs(
+		monte_carlo_count, None, rng_to_use=rng
+	)
+
+	current_sample = sample_dipoles
+	for di, low, high in zip(dot_inputs, lows, highs):
+
+		if len(current_sample) < 1:
+			break
+		vals = pdme.util.fast_v_calc.fast_vs_for_dipoleses(
+			numpy.array([di]), current_sample
+		)
+
+		current_sample = current_sample[numpy.all((vals > low) & (vals < high), axis=1)]
+
+	for pi, plow, phigh in zip(pair_inputs, pair_lows, pair_highs):
+		if len(current_sample) < 1:
+			break
+		vals = pdme.util.fast_nonlocal_spectrum.fast_s_nonlocal_dipoleses(
+			numpy.array([pi]), current_sample
+		)
+
+		current_sample = current_sample[
+			numpy.all(
+				((vals > plow) & (vals < phigh)) | ((vals < plow) & (vals > phigh)),
+				axis=1,
+			)
+		]
+	return len(current_sample)
+
+
+def get_a_result_fast_filter_potential_pair_phase_only(input) -> int:
+	(
+		model,
+		pair_inputs,
+		pair_phase_lows,
+		pair_phase_highs,
+		monte_carlo_count,
+		seed,
+	) = input
+
+	rng = numpy.random.default_rng(seed)
+	# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
+	sample_dipoles = model.get_monte_carlo_dipole_inputs(
+		monte_carlo_count, None, rng_to_use=rng
+	)
+
+	current_sample = sample_dipoles
+
+	for pi, plow, phigh in zip(pair_inputs, pair_phase_lows, pair_phase_highs):
+		if len(current_sample) < 1:
+			break
+		vals = pdme.util.fast_nonlocal_spectrum.signarg(
+			pdme.util.fast_nonlocal_spectrum.fast_s_nonlocal_dipoleses(
+				numpy.array([pi]), current_sample
+			)
+		)
+
+		current_sample = current_sample[
+			numpy.all(
+				((vals > plow) & (vals < phigh)) | ((vals < plow) & (vals > phigh)),
+				axis=1,
+			)
+		]
+	return len(current_sample)
+
+
+def get_a_result_fast_filter_tarucha_spin_qubit_pair_phase_only(input) -> int:
+	(
+		model,
+		pair_inputs,
+		pair_phase_lows,
+		pair_phase_highs,
+		monte_carlo_count,
+		seed,
+	) = input
+
+	def fast_s_spin_qubit_tarucha_nonlocal_dipoleses(
+		dot_pair_inputs: numpy.ndarray, dipoleses: numpy.ndarray
+	) -> numpy.ndarray:
+		"""
+		No error correction here baby.
+		"""
+		ps = dipoleses[:, :, 0:3]
+		ss = dipoleses[:, :, 3:6]
+		ws = dipoleses[:, :, 6]
+
+		r1s = dot_pair_inputs[:, 0, 0:3]
+		r2s = dot_pair_inputs[:, 1, 0:3]
+		f1s = dot_pair_inputs[:, 0, 3]
+		# don't actually need, because we're assuming they're the same frequencies across the pair
+		# f2s = dot_pair_inputs[:, 1, 3]
+
+		diffses1 = r1s[:, None] - ss[:, None, :]
+		diffses2 = r2s[:, None] - ss[:, None, :]
+
+		norms1 = numpy.linalg.norm(diffses1, axis=3)
+		norms2 = numpy.linalg.norm(diffses2, axis=3)
+
+		alphses1 = (
+			(
+				3
+				* numpy.transpose(
+					numpy.transpose(
+						numpy.einsum("abcd,acd->abc", diffses1, ps) / (norms1**2)
+					)
+					* numpy.transpose(diffses1)
+				)[:, :, :, 0]
+			)
+			- ps[:, numpy.newaxis, :, 0]
+		) / (norms1**3)
+		alphses2 = (
+			(
+				3
+				* numpy.transpose(
+					numpy.transpose(
+						numpy.einsum("abcd,acd->abc", diffses2, ps) / (norms2**2)
+					)
+					* numpy.transpose(diffses2)
+				)[:, :, :, 0]
+			)
+			- ps[:, numpy.newaxis, :, 0]
+		) / (norms2**3)
+
+		bses = (1 / numpy.pi) * (
+			ws[:, None, :] / (f1s[:, None] ** 2 + ws[:, None, :] ** 2)
+		)
+
+		return numpy.einsum("...j->...", alphses1 * alphses2 * bses)
+
+	rng = numpy.random.default_rng(seed)
+	# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
+	sample_dipoles = model.get_monte_carlo_dipole_inputs(
+		monte_carlo_count, None, rng_to_use=rng
+	)
+
+	current_sample = sample_dipoles
+
+	for pi, plow, phigh in zip(pair_inputs, pair_phase_lows, pair_phase_highs):
+		if len(current_sample) < 1:
+			break
+
+		###
+		# This should be  abstracted out, but we're going to dump it here for time pressure's sake
+		###
+		# vals = pdme.util.fast_nonlocal_spectrum.signarg(
+		# 	pdme.util.fast_nonlocal_spectrum.fast_s_nonlocal_dipoleses(
+		# 		numpy.array([pi]), current_sample
+		# 	)
+		#
+		vals = pdme.util.fast_nonlocal_spectrum.signarg(
+			fast_s_spin_qubit_tarucha_nonlocal_dipoleses(
+				numpy.array([pi]), current_sample
+			)
+		)
+		current_sample = current_sample[
+			numpy.all(
+				((vals > plow) & (vals < phigh)) | ((vals < plow) & (vals > phigh)),
+				axis=1,
+			)
+		]
+	return len(current_sample)
+
+
+def get_a_result_fast_filter(input) -> int:
 	model, dot_inputs, lows, highs, monte_carlo_count, seed = input

 	rng = numpy.random.default_rng(seed)
@@ -28,8 +207,18 @@ def get_a_result(input) -> int:
 	sample_dipoles = model.get_monte_carlo_dipole_inputs(
 		monte_carlo_count, None, rng_to_use=rng
 	)
-	vals = pdme.util.fast_v_calc.fast_vs_for_dipoleses(dot_inputs, sample_dipoles)
-	return numpy.count_nonzero(pdme.util.fast_v_calc.between(vals, lows, highs))
+
+	current_sample = sample_dipoles
+	for di, low, high in zip(dot_inputs, lows, highs):
+
+		if len(current_sample) < 1:
+			break
+		vals = pdme.util.fast_v_calc.fast_vs_for_dipoleses(
+			numpy.array([di]), current_sample
+		)
+
+		current_sample = current_sample[numpy.all((vals > low) & (vals < high), axis=1)]
+	return len(current_sample)


 class RealSpectrumRun:
@@ -52,6 +241,11 @@ class RealSpectrumRun:

 	run_count: int
 	The number of runs to do.
+
+	If pair_measurements is not None, uses pair measurement method (and single measurements too).
+	If pair_phase_measurements is not None, ignores measurements and uses phase measurements _only_
+	This is lazy design on my part.
+
 	"""

 	def __init__(
@@ -65,6 +259,13 @@ class RealSpectrumRun:
 		max_monte_carlo_cycles_steps: int = 10,
 		chunksize: int = CHUNKSIZE,
 		initial_seed: int = 12345,
+		cap_core_count: int = 0,
+		pair_measurements: Optional[
+			Sequence[pdme.measurement.DotPairRangeMeasurement]
+		] = None,
+		pair_phase_measurements: Optional[
+			Sequence[pdme.measurement.DotPairRangeMeasurement]
+		] = None,
 	) -> None:
 		self.measurements = measurements
 		self.dot_inputs = [(measure.r, measure.f) for measure in self.measurements]
@@ -73,6 +274,37 @@ class RealSpectrumRun:
 			self.dot_inputs
 		)

+		if pair_measurements is not None:
+			self.pair_measurements = pair_measurements
+			self.use_pair_measurements = True
+			self.use_pair_phase_measurements = False
+
+			self.dot_pair_inputs = [
+				(measure.r1, measure.r2, measure.f)
+				for measure in self.pair_measurements
+			]
+			self.dot_pair_inputs_array = (
+				pdme.measurement.input_types.dot_pair_inputs_to_array(
+					self.dot_pair_inputs
+				)
+			)
+		elif pair_phase_measurements is not None:
+			self.use_pair_measurements = False
+			self.use_pair_phase_measurements = True
+			self.pair_phase_measurements = pair_phase_measurements
+			self.dot_pair_inputs = [
+				(measure.r1, measure.r2, measure.f)
+				for measure in self.pair_phase_measurements
+			]
+			self.dot_pair_inputs_array = (
+				pdme.measurement.input_types.dot_pair_inputs_to_array(
+					self.dot_pair_inputs
+				)
+			)
+		else:
+			self.use_pair_measurements = False
+			self.use_pair_phase_measurements = False
+
 		self.models = [model for (_, model) in models_with_names]
 		self.model_names = [name for (name, _) in models_with_names]
 		self.model_count = len(self.models)
@@ -93,9 +325,14 @@ class RealSpectrumRun:
 		self.probabilities = [1 / self.model_count] * self.model_count

 		timestamp = datetime.datetime.now().strftime("%Y%m%d-%H%M%S")
-		self.filename = f"{timestamp}-{filename_slug}.realdata.bayesrun.csv"
+
+		ff_string = "fast_filter"
+
+		self.filename = f"{timestamp}-{filename_slug}.realdata.{ff_string}.bayesrun.csv"
 		self.initial_seed = initial_seed

+		self.cap_core_count = cap_core_count
+
 	def go(self) -> None:
 		with open(self.filename, "a", newline="") as outfile:
 			writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
@@ -108,14 +345,39 @@ class RealSpectrumRun:
 			self.measurements
 		)

+		pair_lows = None
+		pair_highs = None
+		if self.use_pair_measurements:
+			(
+				pair_lows,
+				pair_highs,
+			) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
+				self.pair_measurements
+			)
+
+		pair_phase_lows = None
+		pair_phase_highs = None
+		if self.use_pair_phase_measurements:
+			(
+				pair_phase_lows,
+				pair_phase_highs,
+			) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
+				self.pair_phase_measurements
+			)
+
 		# define a new seed sequence for each run
 		seed_sequence = numpy.random.SeedSequence(self.initial_seed)

 		results = []
 		_logger.debug("Going to iterate over models now")
-		for model_count, model in enumerate(self.models):
-			_logger.debug(f"Doing model #{model_count}")
-			core_count = multiprocessing.cpu_count() - 1 or 1
+		core_count = multiprocessing.cpu_count() - 1 or 1
+		if (self.cap_core_count >= 1) and (self.cap_core_count < core_count):
+			core_count = self.cap_core_count
+		_logger.info(f"Using {core_count} cores")
+		for model_count, (model, model_name) in enumerate(
+			zip(self.models, self.model_names)
+		):
+			_logger.debug(f"Doing model #{model_count}: {model_name}")
 			with multiprocessing.Pool(core_count) as pool:
 				cycle_count = 0
 				cycle_success = 0
@@ -133,23 +395,67 @@ class RealSpectrumRun:
 					# that way we get more stuff.
 					seeds = seed_sequence.spawn(self.monte_carlo_cycles)

-					current_success = sum(
-						pool.imap_unordered(
-							get_a_result,
-							[
-								(
-									model,
-									self.dot_inputs_array,
-									lows,
-									highs,
-									self.monte_carlo_count,
-									seed,
-								)
-								for seed in seeds
-							],
-							self.chunksize,
+					if self.use_pair_measurements:
+						_logger.debug("using pair measurements")
+						current_success = sum(
+							pool.imap_unordered(
+								get_a_result_fast_filter_pairs,
+								[
+									(
+										model,
+										self.dot_inputs_array,
+										lows,
+										highs,
+										self.dot_pair_inputs_array,
+										pair_lows,
+										pair_highs,
+										self.monte_carlo_count,
+										seed,
+									)
+									for seed in seeds
+								],
+								self.chunksize,
+							)
+						)
+					elif self.use_pair_phase_measurements:
+						_logger.debug("using pair phase measurements")
+						_logger.debug("specifically using tarucha")
+						current_success = sum(
+							pool.imap_unordered(
+								get_a_result_fast_filter_tarucha_spin_qubit_pair_phase_only,
+								[
+									(
+										model,
+										self.dot_pair_inputs_array,
+										pair_phase_lows,
+										pair_phase_highs,
+										self.monte_carlo_count,
+										seed,
+									)
+									for seed in seeds
+								],
+								self.chunksize,
+							)
+						)
+					else:
+
+						current_success = sum(
+							pool.imap_unordered(
+								get_a_result_fast_filter,
+								[
+									(
+										model,
+										self.dot_inputs_array,
+										lows,
+										highs,
+										self.monte_carlo_count,
+										seed,
+									)
+									for seed in seeds
+								],
+								self.chunksize,
+							)
 						)
-					)

 					cycle_success += current_success
 					_logger.debug(f"current running successes: {cycle_success}")
--- a/deepdog/results/init.py
+++ b/deepdog/results/init.py
@@ -0,0 +1,169 @@
+import dataclasses
+import re
+import typing
+import logging
+import deepdog.indexify
+import pathlib
+import csv
+
+_logger = logging.getLogger(__name__)
+
+FILENAME_REGEX = r"(?P<timestamp>\d{8}-\d{6})-(?P<filename_slug>.*)\.realdata\.fast_filter\.bayesrun\.csv"
+
+MODEL_REGEXES = [
+	r"geom_(?P<xmin>-?\d+)_(?P<xmax>-?\d+)_(?P<ymin>-?\d+)_(?P<ymax>-?\d+)_(?P<zmin>-?\d+)_(?P<zmax>-?\d+)-orientation_(?P<orientation>free|fixedxy|fixedz)-dipole_count_(?P<avg_filled>\d+)_(?P<field_name>\w*)"
+]
+
+FILE_SLUG_REGEXES = [
+	r"mock_tarucha-(?P<job_index>\d+)",
+]
+
+
+@dataclasses.dataclass
+class BayesrunOutputFilename:
+	timestamp: str
+	filename_slug: str
+	path: pathlib.Path
+
+
+@dataclasses.dataclass
+class BayesrunColumnParsed:
+	"""
+	class for parsing a bayesrun while pulling certain special fields out
+	"""
+
+	def __init__(self, groupdict: typing.Dict[str, str]):
+		self.column_field = groupdict["field_name"]
+		self.model_field_dict = {
+			k: v for k, v in groupdict.items() if k != "field_name"
+		}
+
+	def __str__(self):
+		return f"BayesrunColumnParsed[{self.column_field}: {self.model_field_dict}]"
+
+
+@dataclasses.dataclass
+class BayesrunModelResult:
+	parsed_model_keys: typing.Dict[str, str]
+	success: int
+	count: int
+
+
+@dataclasses.dataclass
+class BayesrunOutput:
+	filename: BayesrunOutputFilename
+	data: typing.Dict["str", typing.Any]
+	results: typing.Sequence[BayesrunModelResult]
+
+
+def _batch_iterable_into_chunks(iterable, n=1):
+	"""
+	utility for batching bayesrun files where columns appear in threes
+	"""
+	for ndx in range(0, len(iterable), n):
+		yield iterable[ndx : min(ndx + n, len(iterable))]
+
+
+def _parse_bayesrun_column(
+	column: str,
+) -> typing.Optional[BayesrunColumnParsed]:
+	"""
+	Tries one by one all of a predefined list of regexes that I might have used in the past.
+	Returns the groupdict for the first match, or None if no match found.
+	"""
+	for pattern in MODEL_REGEXES:
+		match = re.match(pattern, column)
+		if match:
+			return BayesrunColumnParsed(match.groupdict())
+	else:
+		return None
+
+
+def _parse_bayesrun_row(
+	row: typing.Dict[str, str],
+) -> typing.Sequence[BayesrunModelResult]:
+
+	results = []
+	batched_keys = _batch_iterable_into_chunks(list(row.keys()), 3)
+	for model_keys in batched_keys:
+		parsed = [_parse_bayesrun_column(column) for column in model_keys]
+		values = [row[column] for column in model_keys]
+		if parsed[0] is None:
+			raise ValueError(f"no viable success row found for keys {model_keys}")
+		if parsed[1] is None:
+			raise ValueError(f"no viable count row found for keys {model_keys}")
+		if parsed[0].column_field != "success":
+			raise ValueError(f"The column {model_keys[0]} is not a success field")
+		if parsed[1].column_field != "count":
+			raise ValueError(f"The column {model_keys[1]} is not a count field")
+		parsed_keys = parsed[0].model_field_dict
+		success = int(values[0])
+		count = int(values[1])
+		results.append(
+			BayesrunModelResult(
+				parsed_model_keys=parsed_keys,
+				success=success,
+				count=count,
+			)
+		)
+	return results
+
+
+def _parse_output_filename(file: pathlib.Path) -> BayesrunOutputFilename:
+	filename = file.name
+	match = re.match(FILENAME_REGEX, filename)
+	if not match:
+		raise ValueError(f"{filename} was not a valid bayesrun output")
+	groups = match.groupdict()
+	return BayesrunOutputFilename(
+		timestamp=groups["timestamp"], filename_slug=groups["filename_slug"], path=file
+	)
+
+
+def _parse_file_slug(slug: str) -> typing.Optional[typing.Dict[str, str]]:
+	for pattern in FILE_SLUG_REGEXES:
+		match = re.match(pattern, slug)
+		if match:
+			return match.groupdict()
+	else:
+		return None
+
+
+def read_output_file(
+	file: pathlib.Path, indexifier: typing.Optional[deepdog.indexify.Indexifier]
+) -> BayesrunOutput:
+
+	parsed_filename = tag = _parse_output_filename(file)
+	out = BayesrunOutput(filename=parsed_filename, data={}, results=[])
+
+	out.data.update(dataclasses.asdict(tag))
+	parsed_tag = _parse_file_slug(parsed_filename.filename_slug)
+	if parsed_tag is None:
+		_logger.warning(
+			f"Could not parse {tag} against any matching regexes. Going to skip tag parsing"
+		)
+	else:
+		out.data.update(parsed_tag)
+		if indexifier is not None:
+			try:
+				job_index = parsed_tag["job_index"]
+				indexified = indexifier.indexify(int(job_index))
+				out.data.update(indexified)
+			except KeyError:
+				# This isn't really that important of an error, apart from the warning
+				_logger.warning(
+					f"Parsed tag to {parsed_tag}, and attempted to indexify but no job_index key was found. skipping and moving on"
+				)
+
+	with file.open() as input_file:
+		reader = csv.DictReader(input_file)
+		rows = [r for r in reader]
+		if len(rows) == 1:
+			row = rows[0]
+		else:
+			raise ValueError(f"Confused about having multiple rows in {file.name}")
+	results = _parse_bayesrun_row(row)
+
+	out.results = results
+
+	return out
--- a/deepdog/subset_simulation/init.py
+++ b/deepdog/subset_simulation/init.py
@@ -0,0 +1,3 @@
+from deepdog.subset_simulation.subset_simulation_impl import SubsetSimulation
+
+__all__ = ["SubsetSimulation"]
--- a/deepdog/subset_simulation/subset_simulation_impl.py
+++ b/deepdog/subset_simulation/subset_simulation_impl.py
@@ -0,0 +1,388 @@
+import logging
+import numpy
+import pdme.measurement
+import pdme.measurement.input_types
+import pdme.subspace_simulation
+from typing import Sequence, Tuple, Optional
+
+from dataclasses import dataclass
+
+_logger = logging.getLogger(__name__)
+
+
+@dataclass
+class SubsetSimulationResult:
+	probs_list: Sequence[Tuple]
+	over_target_cost: Optional[float]
+	over_target_likelihood: Optional[float]
+	under_target_cost: Optional[float]
+	under_target_likelihood: Optional[float]
+	lowest_likelihood: Optional[float]
+
+
+class SubsetSimulation:
+	def __init__(
+		self,
+		model_name_pair,
+		dot_inputs,
+		actual_measurements: Sequence[pdme.measurement.DotMeasurement],
+		n_c: int,
+		n_s: int,
+		m_max: int,
+		target_cost: Optional[float] = None,
+		level_0_seed: int = 200,
+		mcmc_seed: int = 20,
+		use_adaptive_steps=True,
+		default_phi_step=0.01,
+		default_theta_step=0.01,
+		default_r_step=0.01,
+		default_w_log_step=0.01,
+		default_upper_w_log_step=4,
+		keep_probs_list=True,
+		dump_last_generation_to_file=False,
+		initial_cost_chunk_size=100,
+	):
+		name, model = model_name_pair
+		self.model_name = name
+		self.model = model
+		_logger.info(f"got model {self.model_name}")
+
+		self.dot_inputs_array = pdme.measurement.input_types.dot_inputs_to_array(
+			dot_inputs
+		)
+		# _logger.debug(f"actual measurements: {actual_measurements}")
+		self.actual_measurement_array = numpy.array([m.v for m in actual_measurements])
+
+		def cost_function_to_use(dipoles_to_test):
+			return pdme.subspace_simulation.proportional_costs_vs_actual_measurement(
+				self.dot_inputs_array, self.actual_measurement_array, dipoles_to_test
+			)
+
+		self.cost_function_to_use = cost_function_to_use
+
+		self.n_c = n_c
+		self.n_s = n_s
+		self.m_max = m_max
+
+		self.level_0_seed = level_0_seed
+		self.mcmc_seed = mcmc_seed
+
+		self.use_adaptive_steps = use_adaptive_steps
+		self.default_phi_step = default_phi_step
+		self.default_theta_step = default_theta_step
+		self.default_r_step = default_r_step
+		self.default_w_log_step = default_w_log_step
+		self.default_upper_w_log_step = default_upper_w_log_step
+
+		_logger.info("using params:")
+		_logger.info(f"\tn_c: {self.n_c}")
+		_logger.info(f"\tn_s: {self.n_s}")
+		_logger.info(f"\tm: {self.m_max}")
+		_logger.info("let's do level 0...")
+
+		self.target_cost = target_cost
+		_logger.info(f"will stop at target cost {target_cost}")
+
+		self.keep_probs_list = keep_probs_list
+		self.dump_last_generations = dump_last_generation_to_file
+
+		self.initial_cost_chunk_size = initial_cost_chunk_size
+
+	def execute(self) -> SubsetSimulationResult:
+
+		probs_list = []
+
+		sample_dipoles = self.model.get_monte_carlo_dipole_inputs(
+			self.n_c * self.n_s,
+			-1,
+			rng_to_use=numpy.random.default_rng(self.level_0_seed),
+		)
+		# _logger.debug(sample_dipoles)
+		# _logger.debug(sample_dipoles.shape)
+
+		raw_costs = []
+		_logger.debug(
+			f"Using iterated cost function thing with chunk size {self.initial_cost_chunk_size}"
+		)
+
+		for x in range(0, len(sample_dipoles), self.initial_cost_chunk_size):
+			_logger.debug(f"doing chunk {x}")
+			raw_costs.extend(
+				self.cost_function_to_use(
+					sample_dipoles[x : x + self.initial_cost_chunk_size]
+				)
+			)
+		costs = numpy.array(raw_costs)
+
+		_logger.debug(f"costs: {costs}")
+		sorted_indexes = costs.argsort()[::-1]
+
+		_logger.debug(costs[sorted_indexes])
+		_logger.debug(sample_dipoles[sorted_indexes])
+
+		sorted_costs = costs[sorted_indexes]
+		sorted_dipoles = sample_dipoles[sorted_indexes]
+
+		threshold_cost = sorted_costs[-self.n_c]
+
+		all_dipoles = numpy.array(
+			[
+				pdme.subspace_simulation.sort_array_of_dipoles_by_frequency(samp)
+				for samp in sorted_dipoles
+			]
+		)
+		all_chains = list(zip(sorted_costs, all_dipoles))
+
+		mcmc_rng = numpy.random.default_rng(self.mcmc_seed)
+
+		for i in range(self.m_max):
+			next_seeds = all_chains[-self.n_c :]
+
+			if self.dump_last_generations:
+				_logger.info("writing out csv file")
+				next_dipoles_seed_dipoles = numpy.array([n[1] for n in next_seeds])
+				for n in range(self.model.n):
+					_logger.info(f"{next_dipoles_seed_dipoles[:, n].shape}")
+					numpy.savetxt(
+						f"generation_{self.n_c}_{self.n_s}_{i}_dipole_{n}.csv",
+						next_dipoles_seed_dipoles[:, n],
+						delimiter=",",
+					)
+
+				next_seeds_as_array = numpy.array([s for _, s in next_seeds])
+				stdevs = self.get_stdevs_from_arrays(next_seeds_as_array)
+				_logger.info(f"got stdevs: {stdevs.stdevs}")
+				all_long_chains = []
+				for seed_index, (c, s) in enumerate(
+					next_seeds[:: len(next_seeds) // 20]
+				):
+					# chain = mcmc(s, threshold_cost, n_s, model, dot_inputs_array, actual_measurement_array, mcmc_rng, curr_cost=c, stdevs=stdevs)
+					# until new version gotta do
+					_logger.debug(f"\t{seed_index}: doing long chain on the next seed")
+
+					long_chain = self.model.get_mcmc_chain(
+						s,
+						self.cost_function_to_use,
+						1000,
+						threshold_cost,
+						stdevs,
+						initial_cost=c,
+						rng_arg=mcmc_rng,
+					)
+					for _, chained in long_chain:
+						all_long_chains.append(chained)
+				all_long_chains_array = numpy.array(all_long_chains)
+				for n in range(self.model.n):
+					_logger.info(f"{all_long_chains_array[:, n].shape}")
+					numpy.savetxt(
+						f"long_chain_generation_{self.n_c}_{self.n_s}_{i}_dipole_{n}.csv",
+						all_long_chains_array[:, n],
+						delimiter=",",
+					)
+
+			if self.keep_probs_list:
+				for cost_index, cost_chain in enumerate(all_chains[: -self.n_c]):
+					probs_list.append(
+						(
+							((self.n_c * self.n_s - cost_index) / (self.n_c * self.n_s))
+							/ (self.n_s ** (i)),
+							cost_chain[0],
+							i + 1,
+						)
+					)
+
+			next_seeds_as_array = numpy.array([s for _, s in next_seeds])
+
+			stdevs = self.get_stdevs_from_arrays(next_seeds_as_array)
+			_logger.info(f"got stdevs: {stdevs.stdevs}")
+			_logger.debug("Starting the MCMC")
+			all_chains = []
+			for seed_index, (c, s) in enumerate(next_seeds):
+				# chain = mcmc(s, threshold_cost, n_s, model, dot_inputs_array, actual_measurement_array, mcmc_rng, curr_cost=c, stdevs=stdevs)
+				# until new version gotta do
+				_logger.debug(
+					f"\t{seed_index}: getting another chain from the next seed"
+				)
+				chain = self.model.get_mcmc_chain(
+					s,
+					self.cost_function_to_use,
+					self.n_s,
+					threshold_cost,
+					stdevs,
+					initial_cost=c,
+					rng_arg=mcmc_rng,
+				)
+				for cost, chained in chain:
+					try:
+						filtered_cost = cost[0]
+					except (IndexError, TypeError):
+						filtered_cost = cost
+					all_chains.append((filtered_cost, chained))
+			_logger.debug("finished mcmc")
+			# _logger.debug(all_chains)
+
+			all_chains.sort(key=lambda c: c[0], reverse=True)
+			_logger.debug("finished sorting all_chains")
+
+			threshold_cost = all_chains[-self.n_c][0]
+			_logger.info(
+				f"current threshold cost: {threshold_cost}, at P = (1 / {self.n_s})^{i + 1}"
+			)
+			if (self.target_cost is not None) and (threshold_cost < self.target_cost):
+				_logger.info(
+					f"got a threshold cost {threshold_cost}, less than {self.target_cost}. will leave early"
+				)
+
+				cost_list = [c[0] for c in all_chains]
+				over_index = reverse_bisect_right(cost_list, self.target_cost)
+
+				shorter_probs_list = []
+				for cost_index, cost_chain in enumerate(all_chains):
+					if self.keep_probs_list:
+						probs_list.append(
+							(
+								(
+									(self.n_c * self.n_s - cost_index)
+									/ (self.n_c * self.n_s)
+								)
+								/ (self.n_s ** (i)),
+								cost_chain[0],
+								i + 1,
+							)
+						)
+					shorter_probs_list.append(
+						(
+							cost_chain[0],
+							((self.n_c * self.n_s - cost_index) / (self.n_c * self.n_s))
+							/ (self.n_s ** (i)),
+						)
+					)
+				# _logger.info(shorter_probs_list)
+				result = SubsetSimulationResult(
+					probs_list=probs_list,
+					over_target_cost=shorter_probs_list[over_index - 1][0],
+					over_target_likelihood=shorter_probs_list[over_index - 1][1],
+					under_target_cost=shorter_probs_list[over_index][0],
+					under_target_likelihood=shorter_probs_list[over_index][1],
+					lowest_likelihood=shorter_probs_list[-1][1],
+				)
+				return result
+
+			# _logger.debug([c[0] for c in all_chains[-n_c:]])
+			_logger.info(f"doing level {i + 1}")
+
+		if self.keep_probs_list:
+			for cost_index, cost_chain in enumerate(all_chains):
+				probs_list.append(
+					(
+						((self.n_c * self.n_s - cost_index) / (self.n_c * self.n_s))
+						/ (self.n_s ** (self.m_max)),
+						cost_chain[0],
+						self.m_max + 1,
+					)
+				)
+		threshold_cost = all_chains[-self.n_c][0]
+		_logger.info(
+			f"final threshold cost: {threshold_cost}, at P = (1 / {self.n_s})^{self.m_max + 1}"
+		)
+		for a in all_chains[-10:]:
+			_logger.info(a)
+		# for prob, prob_cost in probs_list:
+		# 	_logger.info(f"\t{prob}: {prob_cost}")
+		probs_list.sort(key=lambda c: c[0], reverse=True)
+
+		min_likelihood = ((1) / (self.n_c * self.n_s)) / (self.n_s ** (self.m_max))
+
+		result = SubsetSimulationResult(
+			probs_list=probs_list,
+			over_target_cost=None,
+			over_target_likelihood=None,
+			under_target_cost=None,
+			under_target_likelihood=None,
+			lowest_likelihood=min_likelihood,
+		)
+		return result
+
+	def get_stdevs_from_arrays(
+		self, array
+	) -> pdme.subspace_simulation.MCMCStandardDeviation:
+		# stdevs = get_stdevs_from_arrays(next_seeds_as_array, model)
+		if self.use_adaptive_steps:
+
+			stdev_array = []
+			count = array.shape[1]
+			for dipole_index in range(count):
+				selected = array[:, dipole_index]
+				pxs = selected[:, 0]
+				pys = selected[:, 1]
+				pzs = selected[:, 2]
+				thetas = numpy.arccos(pzs / self.model.pfixed)
+				phis = numpy.arctan2(pys, pxs)
+
+				rstdevs = numpy.maximum(
+					numpy.std(selected, axis=0)[3:6],
+					self.default_r_step / (self.n_s * 10),
+				)
+				frequency_stdevs = numpy.minimum(
+					numpy.maximum(
+						numpy.std(numpy.log(selected[:, -1])),
+						self.default_w_log_step / (self.n_s * 10),
+					),
+					self.default_upper_w_log_step,
+				)
+				stdev_array.append(
+					pdme.subspace_simulation.DipoleStandardDeviation(
+						p_theta_step=max(
+							numpy.std(thetas), self.default_theta_step / (self.n_s * 10)
+						),
+						p_phi_step=max(
+							numpy.std(phis), self.default_phi_step / (self.n_s * 10)
+						),
+						rx_step=rstdevs[0],
+						ry_step=rstdevs[1],
+						rz_step=rstdevs[2],
+						w_log_step=frequency_stdevs,
+					)
+				)
+		else:
+			default_stdev = pdme.subspace_simulation.DipoleStandardDeviation(
+				self.default_phi_step,
+				self.default_theta_step,
+				self.default_r_step,
+				self.default_r_step,
+				self.default_r_step,
+				self.default_w_log_step,
+			)
+			stdev_array = [default_stdev]
+		stdevs = pdme.subspace_simulation.MCMCStandardDeviation(stdev_array)
+		return stdevs
+
+
+def reverse_bisect_right(a, x, lo=0, hi=None):
+	"""Return the index where to insert item x in list a, assuming a is sorted in descending order.
+
+	The return value i is such that all e in a[:i] have e >= x, and all e in
+	a[i:] have e < x.  So if x already appears in the list, a.insert(x) will
+	insert just after the rightmost x already there.
+
+	Optional args lo (default 0) and hi (default len(a)) bound the
+	slice of a to be searched.
+
+	Essentially, the function returns number of elements in a which are >= than x.
+	>>> a = [8, 6, 5, 4, 2]
+	>>> reverse_bisect_right(a, 5)
+	3
+	>>> a[:reverse_bisect_right(a, 5)]
+	[8, 6, 5]
+	"""
+	if lo < 0:
+		raise ValueError("lo must be non-negative")
+	if hi is None:
+		hi = len(a)
+	while lo < hi:
+		mid = (lo + hi) // 2
+		if x > a[mid]:
+			hi = mid
+		else:
+			lo = mid + 1
+	return lo
--- a/deepdog/temp_aware_real_spectrum_run.py
+++ b/deepdog/temp_aware_real_spectrum_run.py
@@ -0,0 +1,231 @@
+import pdme.inputs
+import pdme.model
+import pdme.measurement
+import pdme.measurement.input_types
+import pdme.measurement.oscillating_dipole
+import pdme.util.fast_v_calc
+import pdme.util.fast_nonlocal_spectrum
+from typing import Sequence, Tuple, List, Dict, Union, Mapping
+import datetime
+import csv
+import multiprocessing
+import logging
+import numpy
+
+
+# TODO: remove hardcode
+CHUNKSIZE = 50
+
+
+_logger = logging.getLogger(__name__)
+
+
+def get_a_result_fast_filter(input) -> int:
+	# 								(
+	# 	model,
+	# 	self.dot_inputs_array_dict,
+	# 	low_high_dict,
+	# 	self.monte_carlo_count,
+	# 	seed,
+	# )
+	model, dot_inputs_dict, low_high_dict, monte_carlo_count, seed = input
+
+	rng = numpy.random.default_rng(seed)
+	# TODO: A long term refactor is to pull the frequency stuff out from here. The None stands for max_frequency, which is unneeded in the actually useful models.
+	sample_dipoles = model.get_monte_carlo_dipole_inputs(
+		monte_carlo_count, None, rng_to_use=rng
+	)
+
+	current_sample = sample_dipoles
+	for temp in dot_inputs_dict.keys():
+		dot_inputs = dot_inputs_dict[temp]
+		lows, highs = low_high_dict[temp]
+		for di, low, high in zip(dot_inputs, lows, highs):
+
+			if len(current_sample) < 1:
+				break
+			vals = pdme.util.fast_v_calc.fast_vs_for_asymmetric_dipoleses(
+				numpy.array([di]), current_sample, temp
+			)
+
+			current_sample = current_sample[
+				numpy.all((vals > low) & (vals < high), axis=1)
+			]
+	return len(current_sample)
+
+
+class TempAwareRealSpectrumRun:
+	"""
+	A bayes run given some real data, with potentially variable temperature.
+
+	Parameters
+	----------
+	measurements_dict : Dict[float, Sequence[pdme.measurement.DotRangeMeasurement]]
+	The dot inputs for this bayes run, in a dictionary indexed by temperatures
+
+	models_with_names : models_with_names: Sequence[Tuple[str, pdme.model.DipoleModel]],
+
+	The models to evaluate.
+
+	actual_model : pdme.model.DipoleModel
+	The model which is actually correct.
+
+	filename_slug : str
+	The filename slug to include.
+
+	run_count: int
+	The number of runs to do.
+	"""
+
+	def __init__(
+		self,
+		measurements_dict: Mapping[
+			float, Sequence[pdme.measurement.DotRangeMeasurement]
+		],
+		models_with_names: Sequence[Tuple[str, pdme.model.DipoleModel]],
+		filename_slug: str,
+		monte_carlo_count: int = 10000,
+		monte_carlo_cycles: int = 10,
+		target_success: int = 100,
+		max_monte_carlo_cycles_steps: int = 10,
+		chunksize: int = CHUNKSIZE,
+		initial_seed: int = 12345,
+		cap_core_count: int = 0,
+	) -> None:
+		self.measurements_dict = measurements_dict
+		self.dot_inputs_dict = {
+			k: [(measure.r, measure.f) for measure in measurements]
+			for k, measurements in measurements_dict.items()
+		}
+
+		self.dot_inputs_array_dict = {
+			k: pdme.measurement.input_types.dot_inputs_to_array(dot_inputs)
+			for k, dot_inputs in self.dot_inputs_dict.items()
+		}
+
+		self.models = [model for (_, model) in models_with_names]
+		self.model_names = [name for (name, _) in models_with_names]
+		self.model_count = len(self.models)
+
+		self.monte_carlo_count = monte_carlo_count
+		self.monte_carlo_cycles = monte_carlo_cycles
+		self.target_success = target_success
+		self.max_monte_carlo_cycles_steps = max_monte_carlo_cycles_steps
+
+		self.csv_fields = []
+
+		self.compensate_zeros = True
+		self.chunksize = chunksize
+		for name in self.model_names:
+			self.csv_fields.extend([f"{name}_success", f"{name}_count", f"{name}_prob"])
+
+		# for now initialise priors as uniform.
+		self.probabilities = [1 / self.model_count] * self.model_count
+
+		timestamp = datetime.datetime.now().strftime("%Y%m%d-%H%M%S")
+		ff_string = "fast_filter"
+		self.filename = f"{timestamp}-{filename_slug}.realdata.{ff_string}.bayesrun.csv"
+		self.initial_seed = initial_seed
+
+		self.cap_core_count = cap_core_count
+
+	def go(self) -> None:
+		with open(self.filename, "a", newline="") as outfile:
+			writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
+			writer.writeheader()
+
+		low_high_dict = {}
+		for temp, measurements in self.measurements_dict.items():
+			(
+				lows,
+				highs,
+			) = pdme.measurement.input_types.dot_range_measurements_low_high_arrays(
+				measurements
+			)
+			low_high_dict[temp] = (lows, highs)
+
+		# define a new seed sequence for each run
+		seed_sequence = numpy.random.SeedSequence(self.initial_seed)
+
+		results = []
+		_logger.debug("Going to iterate over models now")
+		core_count = multiprocessing.cpu_count() - 1 or 1
+		if (self.cap_core_count >= 1) and (self.cap_core_count < core_count):
+			core_count = self.cap_core_count
+		_logger.info(f"Using {core_count} cores")
+		for model_count, (model, model_name) in enumerate(
+			zip(self.models, self.model_names)
+		):
+			_logger.debug(f"Doing model #{model_count}: {model_name}")
+			with multiprocessing.Pool(core_count) as pool:
+				cycle_count = 0
+				cycle_success = 0
+				cycles = 0
+				while (cycles < self.max_monte_carlo_cycles_steps) and (
+					cycle_success <= self.target_success
+				):
+					_logger.debug(f"Starting cycle {cycles}")
+					cycles += 1
+					current_success = 0
+					cycle_count += self.monte_carlo_count * self.monte_carlo_cycles
+
+					# generate a seed from the sequence for each core.
+					# note this needs to be inside the loop for monte carlo cycle steps!
+					# that way we get more stuff.
+					seeds = seed_sequence.spawn(self.monte_carlo_cycles)
+
+					result_func = get_a_result_fast_filter
+
+					current_success = sum(
+						pool.imap_unordered(
+							result_func,
+							[
+								(
+									model,
+									self.dot_inputs_array_dict,
+									low_high_dict,
+									self.monte_carlo_count,
+									seed,
+								)
+								for seed in seeds
+							],
+							self.chunksize,
+						)
+					)
+
+					cycle_success += current_success
+					_logger.debug(f"current running successes: {cycle_success}")
+				results.append((cycle_count, cycle_success))
+
+		_logger.debug("Done, constructing output now")
+		row: Dict[str, Union[int, float, str]] = {}
+
+		successes: List[float] = []
+		counts: List[int] = []
+		for model_index, (name, (count, result)) in enumerate(
+			zip(self.model_names, results)
+		):
+
+			row[f"{name}_success"] = result
+			row[f"{name}_count"] = count
+			successes.append(max(result, 0.5))
+			counts.append(count)
+
+		success_weight = sum(
+			[
+				(succ / count) * prob
+				for succ, count, prob in zip(successes, counts, self.probabilities)
+			]
+		)
+		new_probabilities = [
+			(succ / count) * old_prob / success_weight
+			for succ, count, old_prob in zip(successes, counts, self.probabilities)
+		]
+		self.probabilities = new_probabilities
+		for name, probability in zip(self.model_names, self.probabilities):
+			row[f"{name}_prob"] = probability
+		_logger.info(row)
+
+		with open(self.filename, "a", newline="") as outfile:
+			writer = csv.DictWriter(outfile, fieldnames=self.csv_fields, dialect="unix")
+			writer.writerow(row)
--- a/do.sh
+++ b/do.sh
@@ -1,38 +0,0 @@
-#!/usr/bin/env bash
-# Do - The Simplest Build Tool on Earth.
-# Documentation and examples see https://github.com/8gears/do
-
-set -Eeuo pipefail # -e "Automatic exit from bash shell script on error"  -u "Treat unset variables and parameters as errors"
-
-build() {
-   echo "I am ${FUNCNAME[0]}ing"
-   poetry build
-}
-
-test() {
-   echo "I am ${FUNCNAME[0]}ing"
-   poetry run flake8 deepdog tests
-   poetry run mypy deepdog
-   poetry run pytest
-}
-
-fmt() {
-	poetry run black .
-	find . -type f -name "*.py" -exec sed -i -e 's/    /\t/g' {} \;
-}
-
-release() {
-   ./scripts/release.sh
-}
-
-htmlcov() {
-	poetry run pytest --cov-report=html
-}
-
-all() {
-   build && test
-}
-
-"$@" # <- execute the task
-
-[ "$#" -gt 0 ] || printf "Usage:\n\t./do.sh %s\n" "($(compgen -A function | grep '^[^_]' | paste -sd '|' -))"
--- a/flake.lock
+++ b/flake.lock
@@ -0,0 +1,174 @@
+{
+  "nodes": {
+    "flake-utils": {
+      "inputs": {
+        "systems": "systems"
+      },
+      "locked": {
+        "lastModified": 1710146030,
+        "narHash": "sha256-SZ5L6eA7HJ/nmkzGG7/ISclqe6oZdOZTNoesiInkXPQ=",
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "rev": "b1d9ab70662946ef0850d488da1c9019f3a9752a",
+        "type": "github"
+      },
+      "original": {
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "type": "github"
+      }
+    },
+    "flake-utils_2": {
+      "inputs": {
+        "systems": "systems_2"
+      },
+      "locked": {
+        "lastModified": 1705309234,
+        "narHash": "sha256-uNRRNRKmJyCRC/8y1RqBkqWBLM034y4qN7EprSdmgyA=",
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "rev": "1ef2e671c3b0c19053962c07dbda38332dcebf26",
+        "type": "github"
+      },
+      "original": {
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "type": "github"
+      }
+    },
+    "nix-github-actions": {
+      "inputs": {
+        "nixpkgs": [
+          "poetry2nixSrc",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1703863825,
+        "narHash": "sha256-rXwqjtwiGKJheXB43ybM8NwWB8rO2dSRrEqes0S7F5Y=",
+        "owner": "nix-community",
+        "repo": "nix-github-actions",
+        "rev": "5163432afc817cf8bd1f031418d1869e4c9d5547",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-community",
+        "repo": "nix-github-actions",
+        "type": "github"
+      }
+    },
+    "nixpkgs": {
+      "locked": {
+        "lastModified": 1710703777,
+        "narHash": "sha256-M4CNAgjrtvrxIWIAc98RTYcVFoAgwUhrYekeiMScj18=",
+        "owner": "NixOS",
+        "repo": "nixpkgs",
+        "rev": "fc7885fbcea4b782142e06ce2d4d08cf92862004",
+        "type": "github"
+      },
+      "original": {
+        "owner": "NixOS",
+        "repo": "nixpkgs",
+        "type": "github"
+      }
+    },
+    "poetry2nixSrc": {
+      "inputs": {
+        "flake-utils": "flake-utils_2",
+        "nix-github-actions": "nix-github-actions",
+        "nixpkgs": [
+          "nixpkgs"
+        ],
+        "systems": "systems_3",
+        "treefmt-nix": "treefmt-nix"
+      },
+      "locked": {
+        "lastModified": 1708589824,
+        "narHash": "sha256-2GOiFTkvs5MtVF65sC78KNVxQSmsxtk0WmV1wJ9V2ck=",
+        "owner": "nix-community",
+        "repo": "poetry2nix",
+        "rev": "3c92540611f42d3fb2d0d084a6c694cd6544b609",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-community",
+        "repo": "poetry2nix",
+        "type": "github"
+      }
+    },
+    "root": {
+      "inputs": {
+        "flake-utils": "flake-utils",
+        "nixpkgs": "nixpkgs",
+        "poetry2nixSrc": "poetry2nixSrc"
+      }
+    },
+    "systems": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
+    },
+    "systems_2": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
+    },
+    "systems_3": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "id": "systems",
+        "type": "indirect"
+      }
+    },
+    "treefmt-nix": {
+      "inputs": {
+        "nixpkgs": [
+          "poetry2nixSrc",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1708335038,
+        "narHash": "sha256-ETLZNFBVCabo7lJrpjD6cAbnE11eDOjaQnznmg/6hAE=",
+        "owner": "numtide",
+        "repo": "treefmt-nix",
+        "rev": "e504621290a1fd896631ddbc5e9c16f4366c9f65",
+        "type": "github"
+      },
+      "original": {
+        "owner": "numtide",
+        "repo": "treefmt-nix",
+        "type": "github"
+      }
+    }
+  },
+  "root": "root",
+  "version": 7
+}
--- a/flake.nix
+++ b/flake.nix
@@ -0,0 +1,46 @@
+{
+  description = "Application packaged using poetry2nix";
+
+  inputs.flake-utils.url = "github:numtide/flake-utils";
+  inputs.nixpkgs.url = "github:NixOS/nixpkgs";
+  inputs.poetry2nixSrc = {
+    url = "github:nix-community/poetry2nix";
+    inputs.nixpkgs.follows = "nixpkgs";
+  };
+
+  outputs = { self, nixpkgs, flake-utils, poetry2nixSrc }:
+    flake-utils.lib.eachDefaultSystem (system:
+      let
+        pkgs = nixpkgs.legacyPackages.${system};
+	poetry2nix = poetry2nixSrc.lib.mkPoetry2Nix { inherit pkgs; };
+      in {
+        packages = {
+	  deepdogApp = poetry2nix.mkPoetryApplication {
+            projectDir = self;
+	    python = pkgs.python39;
+	    preferWheels = true;
+	  };
+	  deepdogEnv = poetry2nix.mkPoetryEnv {
+	    projectDir = self;
+	    python = pkgs.python39;
+	    preferWheels = true;
+	    overrides = poetry2nix.overrides.withDefaults (self: super: {
+	    });
+	  };
+	  default = self.packages.${system}.deepdogEnv;
+	};
+	devShells.default = pkgs.mkShell {
+	  inputsFrom = [ self.packages.${system}.deepdogEnv ];
+	  buildInputs = [
+	    pkgs.poetry
+	    self.packages.${system}.deepdogEnv
+	    self.packages.${system}.deepdogApp
+	    pkgs.just
+	  ];
+	  shellHook = ''
+	    export DO_NIX_CUSTOM=1
+	  '';
+	};
+      }
+    );
+}
--- a/jenkins/ci-agent-pod.yaml
+++ b/jenkins/ci-agent-pod.yaml
@@ -1,9 +1,11 @@
 apiVersion: v1
 kind: Pod
 spec:
+  imagePullSecrets:
+    - name: regcreds
  containers:  # list of containers that you want present for your build, you can define a default container in the Jenkinsfile
-    - name: python
-      image: python:3.8
+    - name: poetry
+      image: ghcr.io/dmallubhotla/poetry-image:1
      command: ["tail", "-f", "/dev/null"]  # this or any command that is bascially a noop is required, this is so that you don't overwrite the entrypoint of the base container
      imagePullPolicy: Always # use cache or pull image for agent
      resources:  # limits the resources your build contaienr
--- a/54
+++ b/54
@@ -0,0 +1,54 @@
+
+# execute default build
+default: build
+
+# builds the python module using poetry
+build:
+	echo "building..."
+	poetry build
+
+# print a message displaying whether nix is being used
+checknix:
+	#!/usr/bin/env bash
+	set -euxo pipefail
+	if [[ "${DO_NIX_CUSTOM:=0}" -eq 1 ]]; then
+		echo "In an interactive nix env."
+	else
+		echo "Using poetry as runner, no nix detected."
+	fi
+
+# run all tests
+test: fmt
+	#!/usr/bin/env bash
+	set -euxo pipefail
+	
+	if [[ "${DO_NIX_CUSTOM:=0}" -eq 1 ]]; then
+		echo "testing, using nix..."
+		flake8 deepdog tests
+		mypy deepdog
+		pytest
+	else
+		echo "testing..."
+		poetry run flake8 deepdog tests
+		poetry run mypy deepdog
+		poetry run pytest
+	fi
+
+# format code
+fmt:
+	#!/usr/bin/env bash
+	set -euxo pipefail
+	if [[ "${DO_NIX_CUSTOM:=0}" -eq 1 ]]; then
+	      black .
+	else
+		poetry run black .
+	fi
+	find deepdog -type f -name "*.py" -exec sed -i -e 's/    /\t/g' {} \;
+	find tests -type f -name "*.py" -exec sed -i -e 's/    /\t/g' {} \;
+
+# release the app, checking that our working tree is clean and ready for release
+release:
+	./scripts/release.sh
+
+htmlcov:
+	poetry run pytest --cov-report=html
--- a/poetry.lock
+++ b/poetry.lock
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,20 +1,27 @@
 [tool.poetry]
 name = "deepdog"
-version = "0.6.2"
+version = "0.8.1"
 description = ""
 authors = ["Deepak Mallubhotla <dmallubhotla+github@gmail.com>"]

 [tool.poetry.dependencies]
-python = "^3.8,<3.10"
-pdme = "^0.8.4"
+python = ">=3.8.1,<3.10"
+pdme = "^0.9.3"
+numpy = "1.22.3"
+scipy = "1.10"
+tqdm = "^4.66.2"

 [tool.poetry.dev-dependencies]
 pytest = ">=6"
 flake8 = "^4.0.1"
-pytest-cov = "^3.0.0"
-mypy = "^0.960"
+pytest-cov = "^4.1.0"
+mypy = "^0.991"
 python-semantic-release = "^7.24.0"
 black = "^22.3.0"
+syrupy = "^4.0.8"
+
+[tool.poetry.scripts]
+probs = "deepdog.cli.probs:wrapped_main"

 [build-system]
 requires = ["poetry-core>=1.0.0"]
@@ -35,6 +42,13 @@ module = [
 ]
 ignore_missing_imports = true

+[[tool.mypy.overrides]]
+module = [
+	"tqdm",
+	"tqdm.*"
+]
+ignore_missing_imports = true
+
 [tool.semantic_release]
 version_toml = "pyproject.toml:tool.poetry.version"
 tag_format = "{version}"
--- a/scripts/standard-version/pyproject-updater.js
+++ b/scripts/standard-version/pyproject-updater.js
@@ -1,4 +1,4 @@
-const pattern = /(\[tool\.poetry\]\nname = "deepdog"\nversion = ")(?<vers>\d+\.\d+\.\d)(")/mg;
+const pattern = /(\[tool\.poetry\]\nname = "deepdog"\nversion = ")(?<vers>\d+\.\d+\.\d+)(")/mg;

 module.exports.readVersion = function (contents) {
 	const result = pattern.exec(contents);
--- a/tests/snapshots/test_bayes_run_with_ss.ambr
+++ b/tests/snapshots/test_bayes_run_with_ss.ambr
@@ -0,0 +1,177 @@
+# serializer version: 1
+# name: test_basic_analysis
+  list([
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.3333333333333333,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.3333333333333333,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.3333333333333333,
+      'dipole_frequency_1': 0.006029931414230269,
+      'dipole_frequency_2': 85436.78758379082,
+      'dipole_location_1': array([-4.76615152, -6.33160296,  5.29522808]),
+      'dipole_location_2': array([-4.72700391, -2.06478573,  6.52467702]),
+      'dipole_moment_1': array([ 860.14181416, -450.27082062, -239.60852996]),
+      'dipole_moment_2': array([ 908.18325588, -208.52681777, -362.93214244]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.45,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.3103448275862069,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.9,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.6206896551724138,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.06896551724137932,
+      'dipole_frequency_1': 102275.63477261562,
+      'dipole_frequency_2': 1755280.9783485082,
+      'dipole_location_1': array([ 4.71515397, -9.70362197,  5.43016546]),
+      'dipole_location_2': array([3.42476038, 3.88562934, 5.15034328]),
+      'dipole_moment_1': array([-502.60742674, -790.60222587,  349.7626267 ]),
+      'dipole_moment_2': array([-192.42708465, -434.81009148, -879.7226844 ]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.7,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.6631578947368421,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.18947368421052635,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.7,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.1473684210526316,
+      'dipole_frequency_1': 2896.799464036654,
+      'dipole_frequency_2': 9.980565189326681e-05,
+      'dipole_location_1': array([-4.97465789, 12.54716531,  6.06324588]),
+      'dipole_location_2': array([  9.84518459, -11.1183876 ,   7.35028226]),
+      'dipole_moment_1': array([997.67961917,  19.6376112 ,  65.19004305]),
+      'dipole_moment_2': array([305.63093655, 440.57669389, 844.08643362]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.663157894736842,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.18947368421052635,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.1473684210526316,
+      'dipole_frequency_1': 1.4522667818288244,
+      'dipole_frequency_2': 2704.9795645301197,
+      'dipole_location_1': array([ 7.38183022, 16.6745801 ,  7.10428414]),
+      'dipole_location_2': array([-8.15636906, -9.56609132,  6.34141559]),
+      'dipole_moment_1': array([-145.9924693 ,  738.74936496,  657.97839986]),
+      'dipole_moment_2': array([-960.16113239,  104.96824669, -258.98314046]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.9,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.9465776293823038,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.030050083472454105,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.1,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.02337228714524208,
+      'dipole_frequency_1': 3827.2315421318913,
+      'dipole_frequency_2': 1.9301094166184413e-05,
+      'dipole_location_1': array([ 5.02067673, -0.9783039 ,  6.1431897 ]),
+      'dipole_location_2': array([ 4.66628999, 10.80907459,  7.21771744]),
+      'dipole_moment_1': array([ 871.30659253, -299.17389491, -388.99846068]),
+      'dipole_moment_2': array([-189.87268624,  677.28285845,  710.79975568]),
+    }),
+  ])
+# ---
+# name: test_bayesss_with_tighter_cost
+  list([
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.33333333333333337,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.33333333333333337,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.33333333333333337,
+      'dipole_frequency_1': 0.006029931414230269,
+      'dipole_frequency_2': 85436.78758379082,
+      'dipole_location_1': array([-4.76615152, -6.33160296,  5.29522808]),
+      'dipole_location_2': array([-4.72700391, -2.06478573,  6.52467702]),
+      'dipole_moment_1': array([ 860.14181416, -450.27082062, -239.60852996]),
+      'dipole_moment_2': array([ 908.18325588, -208.52681777, -362.93214244]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.0109375,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.1044776119402985,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.03125,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.2985074626865672,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.0625,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.5970149253731344,
+      'dipole_frequency_1': 102275.63477261562,
+      'dipole_frequency_2': 1755280.9783485082,
+      'dipole_location_1': array([ 4.71515397, -9.70362197,  5.43016546]),
+      'dipole_location_2': array([3.42476038, 3.88562934, 5.15034328]),
+      'dipole_moment_1': array([-502.60742674, -790.60222587,  349.7626267 ]),
+      'dipole_moment_2': array([-192.42708465, -434.81009148, -879.7226844 ]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 7.291135021404688e-05,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.021875,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.4666326413699001,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.0125,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.5332944472798858,
+      'dipole_frequency_1': 2896.799464036654,
+      'dipole_frequency_2': 9.980565189326681e-05,
+      'dipole_location_1': array([-4.97465789, 12.54716531,  6.06324588]),
+      'dipole_location_2': array([  9.84518459, -11.1183876 ,   7.35028226]),
+      'dipole_moment_1': array([997.67961917,  19.6376112 ,  65.19004305]),
+      'dipole_moment_2': array([305.63093655, 440.57669389, 844.08643362]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 7.291135021404688e-05,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.4666326413699001,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.5332944472798858,
+      'dipole_frequency_1': 1.4522667818288244,
+      'dipole_frequency_2': 2704.9795645301197,
+      'dipole_location_1': array([ 7.38183022, 16.6745801 ,  7.10428414]),
+      'dipole_location_2': array([-8.15636906, -9.56609132,  6.34141559]),
+      'dipole_moment_1': array([-145.9924693 ,  738.74936496,  657.97839986]),
+      'dipole_moment_2': array([-960.16113239,  104.96824669, -258.98314046]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 0.175,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 0.00012008361740869356,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.05625,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.24702915581216964,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.15,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.7528507605704217,
+      'dipole_frequency_1': 3827.2315421318913,
+      'dipole_frequency_2': 1.9301094166184413e-05,
+      'dipole_location_1': array([ 5.02067673, -0.9783039 ,  6.1431897 ]),
+      'dipole_location_2': array([ 4.66628999, 10.80907459,  7.21771744]),
+      'dipole_moment_1': array([ 871.30659253, -299.17389491, -388.99846068]),
+      'dipole_moment_2': array([-189.87268624,  677.28285845,  710.79975568]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 4.9116305003549454e-08,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 0.0109375,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.11316396672817797,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.028125,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.886835984155517,
+      'dipole_frequency_1': 1.1715179359592061e-05,
+      'dipole_frequency_2': 0.0019103783276337497,
+      'dipole_location_1': array([-0.95736547,  1.09273812,  7.47158641]),
+      'dipole_location_2': array([ -3.18510322, -15.64493131,   5.81623624]),
+      'dipole_moment_1': array([-184.64961369,  956.56786553,  225.57136075]),
+      'dipole_moment_2': array([ -34.63395137,  801.17771816, -597.42342885]),
+    }),
+    dict({
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedxy-pfixexp_3-dipole_count_2_prob': 1.977090156727901e-10,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_likelihood': 9.765625e-06,
+      'connors_geom-5height-orientation_fixedz-pfixexp_3-dipole_count_2_prob': 0.00045552157211010855,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_likelihood': 0.002734375,
+      'connors_geom-5height-orientation_free-pfixexp_3-dipole_count_2_prob': 0.9995444782301809,
+      'dipole_frequency_1': 999786.9069039805,
+      'dipole_frequency_2': 186034.67996840767,
+      'dipole_location_1': array([-5.59679125,  6.3411602 ,  5.33602522]),
+      'dipole_location_2': array([-0.03412955, -6.83522954,  5.58551513]),
+      'dipole_moment_1': array([826.38270589, 491.81526944, 274.24325726]),
+      'dipole_moment_2': array([ 202.74745884, -656.07483714, -726.95204519]),
+    }),
+  ])
+# ---
--- a/tests/indexify/init.py
+++ b/tests/indexify/init.py
--- a/tests/indexify/test_indexify.py
+++ b/tests/indexify/test_indexify.py
@@ -0,0 +1,12 @@
+import deepdog.indexify
+import logging
+
+_logger = logging.getLogger(__name__)
+
+
+def test_indexifier():
+	weight_dict = {"key_1": [1, 2, 3], "key_2": ["a", "b", "c"]}
+	indexifier = deepdog.indexify.Indexifier(weight_dict)
+	_logger.debug(f"setting up indexifier {indexifier}")
+	assert indexifier.indexify(0) == {"key_1": 1, "key_2": "a"}
+	assert indexifier.indexify(5) == {"key_1": 2, "key_2": "c"}
--- a/tests/results/init.py
+++ b/tests/results/init.py
--- a/tests/results/test_column_results.py
+++ b/tests/results/test_column_results.py
@@ -0,0 +1,28 @@
+import deepdog.results
+
+
+def test_parse_groupdict():
+	example_column_name = (
+		"geom_-20_20_-10_10_0_5-orientation_free-dipole_count_100_success"
+	)
+
+	parsed = deepdog.results._parse_bayesrun_column(example_column_name)
+	expected = deepdog.results.BayesrunColumnParsed(
+		{
+			"xmin": "-20",
+			"xmax": "20",
+			"ymin": "-10",
+			"ymax": "10",
+			"zmin": "0",
+			"zmax": "5",
+			"orientation": "free",
+			"avg_filled": "100",
+			"field_name": "success",
+		}
+	)
+	assert parsed == expected
+
+
+# def test_parse_no_match_column_name():
+# 	parsed = deepdog.results.parse_bayesrun_column("There's nothing here")
+# 	assert parsed is None
--- a/tests/test_bayes_run_with_ss.py
+++ b/tests/test_bayes_run_with_ss.py
@@ -0,0 +1,158 @@
+import deepdog
+import logging
+import logging.config
+
+import numpy.random
+
+from pdme.model import (
+	LogSpacedRandomCountMultipleDipoleFixedMagnitudeModel,
+	LogSpacedRandomCountMultipleDipoleFixedMagnitudeXYModel,
+	LogSpacedRandomCountMultipleDipoleFixedMagnitudeFixedOrientationModel,
+)
+
+
+_logger = logging.getLogger(__name__)
+
+
+def fixed_z_model_func(
+	xmin,
+	xmax,
+	ymin,
+	ymax,
+	zmin,
+	zmax,
+	wexp_min,
+	wexp_max,
+	pfixed,
+	n_max,
+	prob_occupancy,
+):
+	return LogSpacedRandomCountMultipleDipoleFixedMagnitudeFixedOrientationModel(
+		xmin,
+		xmax,
+		ymin,
+		ymax,
+		zmin,
+		zmax,
+		wexp_min,
+		wexp_max,
+		pfixed,
+		0,
+		0,
+		n_max,
+		prob_occupancy,
+	)
+
+
+def get_model(orientation):
+	model_funcs = {
+		"fixedz": fixed_z_model_func,
+		"free": LogSpacedRandomCountMultipleDipoleFixedMagnitudeModel,
+		"fixedxy": LogSpacedRandomCountMultipleDipoleFixedMagnitudeXYModel,
+	}
+	model = model_funcs[orientation](
+		-10,
+		10,
+		-17.5,
+		17.5,
+		5,
+		7.5,
+		-5,
+		6.5,
+		10**3,
+		2,
+		0.99999999,
+	)
+	model.n = 2
+	model.rng = numpy.random.default_rng(1234)
+
+	return (
+		f"connors_geom-5height-orientation_{orientation}-pfixexp_{3}-dipole_count_{2}",
+		model,
+	)
+
+
+def test_basic_analysis(snapshot):
+
+	dot_positions = [[0, 0, 0], [0, 1, 0]]
+
+	freqs = [1, 10, 100]
+	models = []
+
+	orientations = ["free", "fixedxy", "fixedz"]
+	for orientation in orientations:
+		models.append(get_model(orientation))
+
+	_logger.info(f"have {len(models)} models to look at")
+	if len(models) == 1:
+		_logger.info(f"only one model, name: {models[0][0]}")
+
+	square_run = deepdog.BayesRunWithSubspaceSimulation(
+		dot_positions,
+		freqs,
+		models,
+		models[0][1],
+		filename_slug="test",
+		end_threshold=0.9,
+		ss_n_c=5,
+		ss_n_s=2,
+		ss_m_max=10,
+		ss_target_cost=150,
+		ss_level_0_seed=200,
+		ss_mcmc_seed=20,
+		ss_use_adaptive_steps=True,
+		ss_default_phi_step=0.01,
+		ss_default_theta_step=0.01,
+		ss_default_r_step=0.01,
+		ss_default_w_log_step=0.01,
+		ss_default_upper_w_log_step=4,
+		ss_dump_last_generation=False,
+		write_output_to_bayesruncsv=False,
+		ss_initial_costs_chunk_size=1000,
+	)
+	result = square_run.go()
+
+	assert result == snapshot
+
+
+def test_bayesss_with_tighter_cost(snapshot):
+
+	dot_positions = [[0, 0, 0], [0, 1, 0]]
+
+	freqs = [1, 10, 100]
+	models = []
+
+	orientations = ["free", "fixedxy", "fixedz"]
+	for orientation in orientations:
+		models.append(get_model(orientation))
+
+	_logger.info(f"have {len(models)} models to look at")
+	if len(models) == 1:
+		_logger.info(f"only one model, name: {models[0][0]}")
+
+	square_run = deepdog.BayesRunWithSubspaceSimulation(
+		dot_positions,
+		freqs,
+		models,
+		models[0][1],
+		filename_slug="test",
+		end_threshold=0.9,
+		ss_n_c=5,
+		ss_n_s=2,
+		ss_m_max=10,
+		ss_target_cost=1.5,
+		ss_level_0_seed=200,
+		ss_mcmc_seed=20,
+		ss_use_adaptive_steps=True,
+		ss_default_phi_step=0.01,
+		ss_default_theta_step=0.01,
+		ss_default_r_step=0.01,
+		ss_default_w_log_step=0.01,
+		ss_default_upper_w_log_step=4,
+		ss_dump_last_generation=False,
+		write_output_to_bayesruncsv=False,
+		ss_initial_costs_chunk_size=1,
+	)
+	result = square_run.go()
+
+	assert result == snapshot
Author	SHA1	Message	Date
Renovate Bot	0f44495a30	chore(deps): update dependency mypy to ^0.991 Some checks failed renovate/artifacts Artifact file update failure gitea-physics/deepdog/pipeline/pr-master There was a failure building this commit Details	2024-04-29 01:30:53 +00:00
Deepak Mallubhotla	e5f7085324	chore(release): 0.8.1 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2024-04-28 04:27:47 -05:00
Deepak Mallubhotla	578481324b	chore(release): 0.8.1	2024-04-28 04:27:32 -05:00
Deepak Mallubhotla	bf8ac9850d	release: fixes standard version updater which didn't allow minor version to be multidigit	2024-04-28 04:27:06 -05:00
Deepak Mallubhotla	ab408b6412	chore(release): 0.8.1	2024-04-28 04:19:08 -05:00
Deepak Mallubhotla	4aa0a6f234	chore(release): 0.8.0 Some checks failed gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag There was a failure building this commit Details	2024-04-28 04:08:02 -05:00
Deepak Mallubhotla	f9646e3386	fix!: fixes the spin qubit frequency phase shift calculation which had an index problem	2024-04-28 04:07:35 -05:00
Deepak Mallubhotla	3b612b960e	chore(release): 0.7.10 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2024-04-27 23:06:24 -05:00
Deepak Mallubhotla	b0ad4bead0	feat: better management of cli wrapper	2024-04-27 23:04:33 -05:00
Deepak Mallubhotla	4b2e573715	feat: adds cli probs	2024-04-27 18:43:25 -05:00
Deepak Mallubhotla	12e6916ab2	doc: documentation for myself because i'll forget otherwise All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-04-27 12:25:39 -05:00
Deepak Mallubhotla	1e76f63725	git: ignores local_scripts directory as place to run stuff while developing All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-04-25 16:18:14 -05:00
Deepak Mallubhotla	7aa5ad2eb9	chore(release): 0.7.9 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2024-04-21 11:23:42 -05:00
Deepak Mallubhotla	fe331bb544	Merge branch 'filter_compose' All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-04-21 11:21:36 -05:00
Deepak Mallubhotla	03ac85a967	chore: performance enhancement for fmt in justfile All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-04-21 11:21:11 -05:00
Deepak Mallubhotla	96589ff659	adds a filter for future dmc use	2024-04-21 10:55:44 -05:00
Deepak Mallubhotla	e5b5809764	build: delete do.sh All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-03-20 11:28:04 -05:00
Deepak Mallubhotla	1407418c60	Merge pull request 'custom_dmc' (#37 ) from custom_dmc into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #37	2024-03-20 16:27:19 +00:00
Deepak Mallubhotla	383b51c35d	Merge branch 'master' into custom_dmc Some checks are pending gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master Build started... Details	2024-03-20 11:23:39 -05:00
Deepak Mallubhotla	5b9123d128	Merge pull request 'flakeupdate' (#36 ) from flakeupdate into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #36	2024-03-20 16:21:41 +00:00
Deepak Mallubhotla	2b1a1c21e4	Merge branch 'master' into flakeupdate All checks were successful gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2024-03-20 11:18:16 -05:00
Deepak Mallubhotla	ea080ca1c7	feat: adds ability to write custom dmc filters All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-03-20 10:56:54 -05:00
Deepak Mallubhotla	028fe58561	build: fixes issue brekaing build with unused variable Some checks failed gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master There was a failure building this commit Details	2024-03-19 15:46:00 -05:00
Deepak Mallubhotla	b6a41872d5	just: fmt before test, better comments Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2024-03-19 15:45:15 -05:00
Deepak Mallubhotla	731dabd74d	nix: adds just as dependency, and fixes tests by installing deepdog app locally	2024-03-19 15:42:43 -05:00
Deepak Mallubhotla	7950f19c2d	build: adds justfile to replace do Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2024-03-19 15:42:18 -05:00
Deepak Mallubhotla	b27e504bbd	lint: unneeded variable definition All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-03-17 18:40:46 -05:00
Deepak Mallubhotla	33106ba772	nix: updates nix things to work, rewrites flake Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2024-03-17 15:18:52 -05:00
Deepak Mallubhotla	3ae0783d00	feat: adds tarucha phase calculation, using spin qubit precession rate noise Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2024-03-17 14:11:22 -05:00
Deepak Mallubhotla	e8201865eb	chore(release): 0.7.8 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2024-02-28 18:41:32 -06:00
Deepak Mallubhotla	5f534a60cc	fix: uses correct measurements All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-02-28 18:41:05 -06:00
Deepak Mallubhotla	ce90f6774b	chore(release): 0.7.7 All checks were successful gitea-physics/deepdog/pipeline/tag This commit looks good Details gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-02-28 18:34:13 -06:00
Deepak Mallubhotla	48e41cbd2c	fix: fixes phase calculation issue with setting input array All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-02-28 18:33:05 -06:00
Deepak Mallubhotla	603c5607f7	chore(release): 0.7.6 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2024-02-28 16:49:47 -06:00
Deepak Mallubhotla	bb72e903d1	feat: adds ability to use phase measurements only for correlations All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2024-02-28 16:49:24 -06:00
Deepak Mallubhotla	65e1948835	fix: fixes typeerror vs indexerror on bare float as cost in subset simulation	2024-02-28 16:47:03 -06:00
Deepak Mallubhotla	310977e9b8	chore(release): 0.7.5 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2023-12-09 16:27:30 -06:00
Deepak Mallubhotla	b10586bf55	fmt: auto format changes All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-12-09 16:25:57 -06:00
Deepak Mallubhotla	1741807be4	feat: adds direct monte carlo package	2023-12-09 16:24:20 -06:00
Deepak Mallubhotla	9a4548def4	feat: allows disabling timestamp in subset simulation bayes results	2023-12-09 16:23:45 -06:00
Deepak Mallubhotla	b4e5f53726	feat: adds longchain logging if logging last generation Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-08-12 19:48:30 -05:00
Deepak Mallubhotla	f7559b2c4f	chore(release): 0.7.4 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2023-07-27 17:40:50 -05:00
Deepak Mallubhotla	9a7a3ff2c7	feat: adds configurable chunk size for the initial mc level 0 SS stage cost calculation to reduce memory usage All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-07-27 17:39:02 -05:00
Deepak Mallubhotla	c4805806be	test: fixes lint for none type All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-07-27 17:11:57 -05:00
Deepak Mallubhotla	161bcf42ad	fix: fixes bug if case of clamping necessary	2023-07-27 17:09:52 -05:00
Deepak Mallubhotla	8e6ead416c	feat: allows for deepdog bayesrun with ss to not print csv to make snapshot testing possible	2023-07-27 17:09:36 -05:00
Deepak Mallubhotla	e6defc7948	fix: fixes bug with clamped probabilities being underestimated	2023-07-27 17:05:33 -05:00
Deepak Mallubhotla	33d5da6a4f	fmt: adds e203 to flake8 ignore to let black do its thing	2023-07-27 16:49:31 -05:00
Deepak Mallubhotla	1110372a55	build: more efficient doo fmt	2023-07-27 16:47:11 -05:00
Deepak Mallubhotla	e6a00d6b8f	debug: adds debug logs	2023-07-27 16:25:51 -05:00
Deepak Mallubhotla	57cd746e5c	chore(release): 0.7.3 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2023-07-26 20:27:39 -05:00
Deepak Mallubhotla	878e16286b	deps: updates pytest-cov All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-07-26 20:23:48 -05:00
Deepak Mallubhotla	4726ccfb8c	fmt: formatting	2023-07-26 20:21:53 -05:00
Deepak Mallubhotla	598dad1e6d	feat: adds utility options and avoids memory leak Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-07-26 20:14:19 -05:00
Deepak Mallubhotla	01c0d7e49b	chore(release): 0.7.2 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2023-07-24 10:44:51 -05:00
Deepak Mallubhotla	a170a3ce01	fix: fixes clamping format etc. All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-07-24 10:26:35 -05:00
Deepak Mallubhotla	9bb8fc50fe	feat: clamps results now Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-07-24 10:24:23 -05:00
Deepak Mallubhotla	f775ed34c6	chore(release): 0.7.1 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2023-07-24 02:04:42 -05:00
Deepak Mallubhotla	7d0c2b22cc	Merge pull request 'mcmc' (#32 ) from mcmc into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #32	2023-07-24 07:02:19 +00:00
Deepak Mallubhotla	d6e6876a79	fmt: fixes some linting issues All checks were successful gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2023-07-24 01:59:07 -05:00
Deepak Mallubhotla	fccf50eb27	fmt: formatting improvements	2023-07-24 01:55:37 -05:00
Deepak Mallubhotla	33cab9ab41	feat: adds subset simulation stuff Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details gitea-physics/deepdog/pipeline/pr-master There was a failure building this commit Details	2023-07-24 01:50:56 -05:00
Deepak Mallubhotla	ad521ba472	deps: upgrades pdme version to use mcmc code All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-07-23 18:46:11 -05:00
Deepak Mallubhotla	266d6dd583	chore(release): 0.7.0 All checks were successful gitea-physics/deepdog/pipeline/tag This commit looks good Details gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-05-01 10:26:01 -05:00
Deepak Mallubhotla	c573f8806d	Merge pull request 'add_pairs' (#30 ) from add_pairs into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #30	2023-05-01 15:24:57 +00:00
Deepak Mallubhotla	a015daf5ff	feat!: removes fastfilter parameter because it should never be needed All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2023-05-01 10:17:12 -05:00
Deepak Mallubhotla	a089951bbe	feat: adds pair capability to real spectrum run hopefully All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-05-01 10:05:46 -05:00
Deepak Mallubhotla	7568aef842	chore(release): 0.6.7 All checks were successful gitea-physics/deepdog/pipeline/tag This commit looks good Details gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-04-13 20:26:06 -05:00
Deepak Mallubhotla	c4b6cbbb6f	Merge pull request 'cap_core' (#29 ) from cap_core into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #29	2023-04-14 01:24:01 +00:00
Deepak Mallubhotla	1cf4454153	fix: avoids redefinition of core count in loop All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2023-04-13 20:21:17 -05:00
Deepak Mallubhotla	bf15f4a7b7	feat: adds option to cap core count for real spectrum run All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-04-13 20:17:48 -05:00
Deepak Mallubhotla	12903b2540	feat: adds option to cap core count for temp aware run	2023-04-13 20:16:33 -05:00
Deepak Mallubhotla	959b9af378	chore(release): 0.6.6 All checks were successful gitea-physics/deepdog/pipeline/tag This commit looks good Details gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-04-09 18:13:40 -05:00
Deepak Mallubhotla	8fd1b75e13	fix: removes bad logging in multiprocessing function All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-04-09 18:12:57 -05:00
Deepak Mallubhotla	17ae84879d	chore(release): 0.6.5 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2023-04-09 17:42:44 -05:00
Deepak Mallubhotla	fc2880ba2f	build: changes default container to be accurate All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2023-04-09 17:38:38 -05:00
Deepak Mallubhotla	589c16f25c	build: removing unneeded env vars for poetry Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-04-09 17:37:23 -05:00
Deepak Mallubhotla	743c3e22ae	build: use pre-built poetry image Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-04-09 17:35:37 -05:00
Deepak Mallubhotla	b3e2acd79c	chore: updates maintained readme Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-04-09 17:32:44 -05:00
Deepak Mallubhotla	de1ec3e700	feat: adds temp aware guy using new pdme temp-flexible feature for bundling temp models Some checks failed gitea-physics/deepdog/pipeline/head There was a failure building this commit Details	2023-04-09 17:30:30 -05:00
Deepak Mallubhotla	f4964a19ea	chore(release): 0.6.4 All checks were successful gitea-physics/deepdog/pipeline/tag This commit looks good Details gitea-physics/deepdog/pipeline/head This commit looks good Details	2022-08-13 15:52:17 -05:00
Deepak Mallubhotla	08d73c73e9	Merge pull request 'feat: Prints model names while running' (#21 ) from printnames into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #21	2022-08-13 20:49:03 +00:00
Deepak Mallubhotla	7ea1d715f6	feat: Prints model names while running Some checks are pending gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master Build queued... Details	2022-08-13 11:10:00 -05:00
Deepak Mallubhotla	ed102799d1	Merge pull request 'chore(deps): update dependency mypy to ^0.971' (#18 ) from renovate/mypy-0.x into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #18	2022-07-20 19:07:24 +00:00
Renovate Bot	0b8d14ef48	chore(deps): update dependency mypy to ^0.971 Some checks reported errors gitea-physics/deepdog/pipeline/pr-master This commit looks good Details gitea-physics/deepdog/pipeline/head Something is wrong with the build of this commit Details	2022-07-20 01:31:30 +00:00
Deepak Mallubhotla	a5d0d257d7	Merge pull request 'nix' (#15 ) from nix into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #15	2022-06-13 13:47:00 +00:00
Deepak Mallubhotla	6ee995e561	Merge branch 'master' into nix All checks were successful gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2022-06-13 13:23:08 +00:00
Deepak Mallubhotla	a217ad2c75	nix: updates nixpkgs and uses workaround for pdme build-system Some checks are pending gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master Build queued... Details	2022-06-13 08:18:55 -05:00
Deepak Mallubhotla	039f68ee97	deps: pins specific scipy and numpy version	2022-06-13 08:16:53 -05:00
Deepak Mallubhotla	e9dd21f69b	chore(release): 0.6.3 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/tag This commit looks good Details	2022-06-12 17:35:08 -05:00
Deepak Mallubhotla	8303fc7860	nix: flake lock	2022-06-12 10:45:01 -05:00
Deepak Mallubhotla	2418e3a263	nix: adds nix direnv stuff to gitignore	2022-06-12 10:43:17 -05:00
Deepak Mallubhotla	73465203b2	nix: adds flake.nix	2022-06-12 10:42:45 -05:00
Deepak Mallubhotla	01ba4af229	Merge pull request 'fastfilter' (#14 ) from fastfilter into master All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details Reviewed-on: #14	2022-06-12 13:51:47 +00:00
Deepak Mallubhotla	2c5c122820	feat: adds fast filter variant All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2022-06-11 21:06:27 -05:00
Deepak Mallubhotla	0a1a27759b	feat: adds tester for fast filter real spectrum	2022-06-11 12:40:32 -05:00
Deepak Mallubhotla	558a4df643	Merge pull request 'chore(deps): update dependency mypy to ^0.961' (#13 ) from renovate/mypy-0.x into master Some checks reported errors gitea-physics/deepdog/pipeline/head Something is wrong with the build of this commit Details Reviewed-on: #13	2022-06-07 22:03:11 +00:00
Renovate Bot	6f141af0fe	chore(deps): update dependency mypy to ^0.961 All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details gitea-physics/deepdog/pipeline/pr-master This commit looks good Details	2022-06-07 01:31:28 +00:00
Deepak Mallubhotla	2c99fcf687	deps: updates pdme All checks were successful gitea-physics/deepdog/pipeline/head This commit looks good Details	2022-06-04 12:33:05 -05:00